PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 249aa MW: 28806.7 Da PI: 7.1967

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0993s0119.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102.4	2.5e-32	38	143	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k ltpsdv+k++rlv+pk++ae++ + e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F Cagra.0993s0119.1.p 38 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLF 126 99***************************99644.46888********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ ++++++++++r+ Cagra.0993s0119.1.p 127 HRHRADGGRFFIGWRRR 143 88779999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.9E-41	32	151	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-31	35	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.55E-28	37	133	No hit	No description
Pfam	PF02362	8.2E-30	38	143	IPR003340	B3 DNA binding domain
SMART	SM01019	7.1E-24	38	144	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.057	38	144	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSITQYSSDF HYHSLMWQQQ QHHHHHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA 60 ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA 120 GDVVLFHRHR ADGGRFFIGW RRRGDSSSSS DSYRHHQSNA SLQYHPHAGA QAVESPRANS 180 KTLRLFGVNM ECQLDSEWSE PSTPDGSNTC TTNHDQFHFY PHQQHYPPPY YMDISFTGDV 240 NRTRSPQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-49	31	143	1	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-49	31	143	1	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0993s0119.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117587	0.0	AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294872.1	0.0	B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	1e-156	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	R0HR36	0.0	R0HR36_9BRAS; Uncharacterized protein
STRING	Cagra.0993s0119.1.p	0.0	(Capsella grandiflora)
STRING	XP_006294872.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	1e-129	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.0993s0119.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]