PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0993s0063.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 408aa    MW: 42910.2 Da    PI: 5.476
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0993s0063.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.91.9e-22301363163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN+ L+ e+++lk ++++l +e+
  Cagra.0993s0063.2.p 301 DRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELSAEN 363
                          689********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.5E-2710104IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.1E-46143270No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-17294360No hitNo description
SMARTSM003382.7E-19301365IPR004827Basic-leucine zipper domain
PfamPF001705.0E-20302363IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.162303366IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-11304359No hitNo description
CDDcd147021.83E-24306356No hitNo description
PROSITE patternPS000360308323IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MASSENIEKS SKEKEPKTPP SSSAAPPASQ EPSSAVSAGM ATPDWTGFQA YSPMPPPHGY  60
VASSPQPHPY MWGVQHMMPP YGTPPHPYVA MYPPGGMYAH PSMPPGSYPY SPYAMPSPNG  120
MTEASGNSTG GTEGDGKQSE VKEKLPIKRS RGSLGSLNMI TGKNNEPGKN SGAAANGAYS  180
KSGESASDGS SEGSDGNSQN DSGSGQDGKD ASENGGTANG PRNGSVGTPL LPVSQTVPIM  240
PMTAAGVPGP PTNLNIGMDY WGAPTSSAIP GMHGKVSTPV PGVVAPVSRD GGHSQPWLQD  300
DRELKRQRRK QSNRESARRS RLRKQAECDE LAQRAEVLNE ENTNLRAEIN KLKSQCEELS  360
AENTSLKDQL LLFPPLEGIN MEKDGQGPDT DQTGGEERKV DCYKDST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323RRSRLRK
2317324RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0993s0063.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264410.0BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640672.10.0bZIP transcription factor 16 isoform X2
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A178VPW60.0A0A178VPW6_ARATH; BZIP16
STRINGCagra.0993s0063.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]