PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0952s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 214aa    MW: 23836.7 Da    PI: 9.7158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0952s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-202069255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrd ++    + r++lg+f++aeeAa+a++ a+++l+g
  Cagra.0952s0001.1.p 20 RFRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAEEAARAYDSAARNLRG 69
                         69*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-311979No hitNo description
SuperFamilySSF541715.82E-222078IPR016177DNA-binding domain
SMARTSM003805.0E-372083IPR001471AP2/ERF domain
PROSITE profilePS5103223.3412077IPR001471AP2/ERF domain
PfamPF008473.2E-132069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-322077IPR001471AP2/ERF domain
PRINTSPR003671.9E-102132IPR001471AP2/ERF domain
PRINTSPR003671.9E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKRGRGSSAV INASLKDTQR FRGVRKRPWG RFAAEIRDPW KKSRVWLGTF DSAEEAARAY  60
DSAARNLRGP KAKTNFPILP SSPNLPFPST INQLDPFMDH RLFHAHTNNT HPVVNRPTCS  120
SMSSTVESFS GPRPTSTKPV TTPPAAKRYP RTPPVVPEDC HSDCDSSSSV IDDDIASRRR  180
NPPFQFDLNF PPLDDVDFFN GSSDDLHCTD LRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20477572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0952s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304201.11e-153ethylene-responsive transcription factor 3
SwissprotO803395e-86ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLR0I4B41e-151R0I4B4_9BRAS; Uncharacterized protein
STRINGCagra.0952s0001.1.p1e-154(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-74ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]