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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0926s0071.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 370aa MW: 38155.9 Da PI: 7.7665 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0926s0071.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 228.7 | 1e-70 | 135 | 282 | 2 | 152 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91
+sg++sCqdCGnqakkdCah+RCRtCCksrgf+C thv+stWvpaakrrerqqqla+ + +++ + e+ +kr+re+ +++s+l +t++
Cagra.0926s0071.1.p 135 GSGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHVRSTWVPAAKRRERQQQLATVHPQTQLPRGESVPKRHRENLPATSSSLVCTRI 224
57899*****************************************************99999999************************ PP
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
+s++ le+ ++P+evss+avfrcvrvssv+dgeee+aYqtavsigGhvfkGiLyd+G
Cagra.0926s0071.1.p 225 PSHS---GLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHVFKGILYDHGR 282
9995...78999***********************************************95 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSESWLW YRNPNANANT NANAPSSSTN 60 AALGTLELWQ NHNQQEIMFQ HQQHQQRLDL YSSAAGLGVG PSNPSQFDIS GETSNAGAGR 120 ASGLMMIRSG GGGGGSGGVS CQDCGNQAKK DCAHMRCRTC CKSRGFECPT HVRSTWVPAA 180 KRRERQQQLA TVHPQTQLPR GESVPKRHRE NLPATSSSLV CTRIPSHSGL EVGNFPAEVS 240 SSAVFRCVRV SSVEDGEEEF AYQTAVSIGG HVFKGILYDH GRPGSSGGGG YNVIAAGESS 300 SGGGGAQQLN LITAGSVTVA TASSSTPNLG GGIGSSSAAA ATYIDPAALY PTPINTFMAG 360 TQFFPSPRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G51060.1 | 1e-167 | Lateral root primordium (LRP) protein-related |