 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.0926s0034.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
BES1 |
| Protein Properties |
Length: 280aa MW: 30265.8 Da PI: 9.9239 |
| Description |
BES1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0926s0034.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF822 | 204.8 | 2.4e-63 | 15 | 154 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91
+ gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+ ++ p+
Cagra.0926s0034.1.p 15 AMGRTPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPM---------DTTPPC 95
789************************************************************************.........8899** PP
DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145
ss+q+s++ssa++sp++sy+asp+sss+psp+++d+i+++ + + l+p+l++l++
Cagra.0926s0034.1.p 96 SSIQLSPQSSAFQSPIPSYQASPASSSYPSPTRFDHIPNRFDpnqssTYLIPYLQNLAS 154
************************************98764456666888888888876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MTASGGGGGG GSTAAMGRTP TWKERENNKR RERRRRAIAA KIFTGLRSQG NYKLPKHCDN 60
NEVLKALCLE AGWIVHEDGT TYRKGSRPMD TTPPCSSIQL SPQSSAFQSP IPSYQASPAS 120
SSYPSPTRFD HIPNRFDPNQ SSTYLIPYLQ NLASSGNLAP LRISNSAPVT PPLSSPRGSA 180
PRLPKWQSSN FPVSAPSSPT RRLRHYTSIP ECDESDVSTV DSCRWGSFKP VNVSQTCPPS 240
PTFNLVGNVS VKPWEGEKIH DVGVDDLELT LGNNAKGRG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5zd4_A | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_B | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_C | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_D | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT002452 | 1e-127 | BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds. |
| GenBank | BT006310 | 1e-127 | BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds. |
