PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.0926s0015.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 120aa MW: 14215.5 Da PI: 7.4653

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0926s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.8	4.3e-25	6	97	4	95
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 Ck r +C ++Cv+apy+pa+++ k+ + k++ ++++ +++ +++++er++ ++s ++eAear+rdPv G++g i+ lq qle+ k ++ Cagra.0926s0015.1.p 6 TCKEVRHNCIEECVFAPYLPATNKDKYTKLSKVYDMRRLAQYVMDIEPSERQICVDSFCFEAEARLRDPVFGVTGYIHLLQLQLEEIKPLIQ 97 7***********************************************************************************99886555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.36	2	103	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-23	6	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MEYSCTCKEV RHNCIEECVF APYLPATNKD KYTKLSKVYD MRRLAQYVMD IEPSERQICV 60 DSFCFEAEAR LRDPVFGVTG YIHLLQLQLE EIKPLIQIAK RDHMMILQRN RQNHRHDHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-18	6	93	14	101	LOB family transfactor Ramosa2.1
5ly0_B	9e-18	6	93	14	101	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0926s0015.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019101899.1	9e-36	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	R0FR77	2e-80	R0FR77_9BRAS; Uncharacterized protein
STRING	Cagra.0926s0015.1.p	8e-85	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	2e-22	LOB domain-containing protein 10

Link Out ? help Back to Top
Phytozome	Cagra.0926s0015.1.p