PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.0926s0014.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 131aa MW: 14946.4 Da PI: 7.7551

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0926s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.1	7.6e-30	5	101	4	100
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 Ck + +C ++Cv+apy+pa++p+k++ + k+F s v +l+ ++++++++ ++sl++eAear+rdPv G++g+i++lq+ql++l+ + Cagra.0926s0014.1.p 5 ECKNVKHACIEECVFAPYLPANKPEKYNTLSKVFDISSVAELVMGIEPSQKQACVDSLCFEAEARLRDPVMGCTGLIRQLQHQLQNLQIQ 94 59999*********************************************************************************** PP DUF260 94 lallkee 100 l+ +k+e Cagra.0926s0014.1.p 95 LKIAKSE 101 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.939	1	102	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-29	5	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MESCECKNVK HACIEECVFA PYLPANKPEK YNTLSKVFDI SSVAELVMGI EPSQKQACVD 60 SLCFEAEARL RDPVMGCTGL IRQLQHQLQN LQIQLKIAKS ELMMVLQEIH NRNRIAQQQN 120 LQHPYIRSRF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	6	103	15	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	6	103	15	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0926s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019101899.1	5e-42	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	R0H7D0	1e-74	R0H7D0_9BRAS; Uncharacterized protein
STRING	Cagra.0926s0014.1.p	7e-92	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	1e-22	LBD family protein

Link Out ? help Back to Top
Phytozome	Cagra.0926s0014.1.p