PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.0925s0070.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 127aa MW: 14764.5 Da PI: 5.2717

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0925s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.7	2.2e-10	8	105	1	113
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp GfrF+P+d e+ +++Lk+k+ g + ++ + i+e + + + p +e++wy+F++++ ++ +r +++W +++ Cagra.0925s0070.1.p 8 LPSGFRFRPSDCEMANYFLKNKALGLPKKA-RSIPEQECHGY-----P-----GEEHWYYFCRKRDTQ-----VTRN-PHSIWTPIEQET 80 699**********************988.66887665544.....5.....6789*997754.....4564.4589****** PP NAM 91 evlsk..kgelvglkktLvfykgra 113 +vl+ +++l g + +++ ++++ Cagra.0925s0070.1.p 81 DVLDPknNDALLGFSRRFTLVDKKE 105 *999844455577777777775554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-14	6	106	IPR003441	NAC domain
PROSITE profile	PS51005	10.468	8	126	IPR003441	NAC domain
Pfam	PF02365	1.8E-9	9	101	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MEPTYRDLPS GFRFRPSDCE MANYFLKNKA LGLPKKARSI PEQECHGYPG EEHWYYFCRK 60 RDTQVTRNPH SIWTPIEQET DVLDPKNNDA LLGFSRRFTL VDKKEESDDS CLSDDEEAPK 120 YHMIGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0925s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431404.1	1e-61	PREDICTED: NAC domain-containing protein 79
TrEMBL	A0A178VFA9	5e-57	A0A178VFA9_ARATH; Uncharacterized protein
STRING	Cagra.0925s0070.1.p	2e-91	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8604	17	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56520.1	4e-52	NAC family protein

Link Out ? help Back to Top
Phytozome	Cagra.0925s0070.1.p