PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0917s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 72aa MW: 8070.42 Da PI: 10.2884 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.6 | 9.3e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtf+kRrng++ KA LS+LC+ va++i+sstgkly +ss Cagra.0917s0080.1.p 9 KRIEDKSSRQVTFCKRRNGLMEKARQLSILCESSVALVIVSSTGKLYSFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.2E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-26 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MGRRKVEIKR IEDKSSRQVT FCKRRNGLME KARQLSILCE SSVALVIVSS TGKLYSFSSG 60 DRVIEEQCAL F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 6e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 6e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 6e-19 | 1 | 61 | 1 | 61 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flowering time in short days, probably through the photoperiodic and vernalization pathways. Prevents premature flowering, particularly in the cv. Landsberg erecta background. In non-inductive photoperiods (e.g. short days), required for flowering through VIL2-mediated maintenance of the epigenetically repressed state of MAF5 via H3K9me2 and plant homeodomain / polycomb repressive complex 2 (PHD-PRC2)-dependent H3K27me3. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:18798874, ECO:0000269|PubMed:18852898, ECO:0000269|PubMed:20837520, ECO:0000269|PubMed:21150261, ECO:0000269|PubMed:21175890, ECO:0000269|PubMed:21398257, ECO:0000269|PubMed:22378382}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0917s0080.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by vernalization. Repressed by VIL2, AGL6, CLF, EMF2 and FIE via epigenetic chromatin H3K27me3 and H3K9me2 regulation during the vegetative development. {ECO:0000269|PubMed:12724541}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY231455 | 4e-54 | AY231455.1 Arabidopsis thaliana MADS affecting flowering 5 variant I (MAF5) mRNA, complete cds. | |||
GenBank | AY231456 | 4e-54 | AY231456.1 Arabidopsis thaliana MADS affecting flowering 5 variant II (MAF5) mRNA, complete cds. | |||
GenBank | BT025268 | 4e-54 | BT025268.1 Arabidopsis thaliana At5g65080 mRNA, complete cds. | |||
GenBank | CP002688 | 4e-54 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | EU980614 | 4e-54 | EU980614.1 Arabidopsis thaliana ecotype Cvi-0 MAF2 (MAF2) gene, complete cds; MAF3 gene, complete sequence; and MAF4 (MAF4) and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980615 | 4e-54 | EU980615.1 Arabidopsis thaliana ecotype Ita-0 MAF2 (MAF2) gene, complete cds; MAF3 gene, complete sequence; MAF4 (MAF4) gene, complete cds; and MAF5 (MAF5) gene, partial cds. | |||
GenBank | EU980616 | 4e-54 | EU980616.1 Arabidopsis thaliana ecotype Bu-2 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980618 | 4e-54 | EU980618.1 Arabidopsis thaliana ecotype Li-3 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980619 | 4e-54 | EU980619.1 Arabidopsis thaliana ecotype Li-8 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980620 | 4e-54 | EU980620.1 Arabidopsis thaliana ecotype PHW-1 MAF2 (MAF2) gene, complete cds; MAF3 gene, complete sequence; and MAF4 (MAF4) and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980621 | 4e-54 | EU980621.1 Arabidopsis thaliana ecotype Nd-0 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980622 | 4e-54 | EU980622.1 Arabidopsis thaliana ecotype PHW-33 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980623 | 4e-54 | EU980623.1 Arabidopsis thaliana ecotype Co-1 MAF2 (MAF2) gene, partial cds; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980624 | 4e-54 | EU980624.1 Arabidopsis thaliana ecotype Bu-0 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980625 | 4e-54 | EU980625.1 Arabidopsis thaliana ecotype No-0 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980626 | 4e-54 | EU980626.1 Arabidopsis thaliana MAF2 (MAF2), MAF3 (MAF3), and MAF4 (MAF4) genes, complete cds; and MAF5 (MAF5) gene, partial cds. | |||
GenBank | EU980627 | 4e-54 | EU980627.1 Arabidopsis thaliana ecotype Kas-1 MAF2 (MAF2) gene, partial cds; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980628 | 4e-54 | EU980628.1 Arabidopsis thaliana ecotype Chi-1 MAF2 (MAF2), MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980629 | 4e-54 | EU980629.1 Arabidopsis thaliana ecotype Gr-3 MAF2 gene, complete sequence; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980630 | 4e-54 | EU980630.1 Arabidopsis thaliana ecotype Bs-1 MAF2 gene, complete sequence; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190617.1 | 3e-39 | K-box region and MADS-box transcription factor family protein | ||||
Swissprot | Q683D7 | 1e-31 | MAF5_ARATH; Protein MADS AFFECTING FLOWERING 5 | ||||
TrEMBL | F4KGH9 | 8e-38 | F4KGH9_ARATH; K-box region and MADS-box transcription factor family protein | ||||
STRING | Cagra.0917s0080.1.p | 2e-43 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.3 | 1e-42 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0917s0080.1.p |