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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.0917s0078.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 198aa MW: 22513.9 Da PI: 8.4769 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0917s0078.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 71.7 | 6.3e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krie+k rqvtf+kRrng++ KA LSvLC+ va+ i+sstgkly +ss
Cagra.0917s0078.1.p 9 KRIEDKNSRQVTFCKRRNGLMEKARQLSVLCGSSVALFIVSSTGKLYSFSS 59
79***********************************************96 PP
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| 2 | K-box | 37.4 | 1.1e-13 | 111 | 165 | 45 | 99 |
K-box 45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ s++ L ++e+qL+k+l+ R++K+el++e++++lq kek l+een+ L +++
Cagra.0917s0078.1.p 111 NVSVESLISIEEQLKKALSVTRARKTELIMEHVKTLQDKEKLLEEENQVLARQMR 165
578999********************************************99986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009910 | Biological Process | negative regulation of flower development |
| GO:0010048 | Biological Process | vernalization response |
| GO:0048587 | Biological Process | regulation of short-day photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MGRRRVEIKR IEDKNSRQVT FCKRRNGLME KARQLSVLCG SSVALFIVSS TGKLYSFSSG 60
DSLAKTLSRY EIQNADDHTT LDLAEKTQDH ISNKELLEII QCKLEEVKSD NVSVESLISI 120
EEQLKKALSV TRARKTELIM EHVKTLQDKE KLLEEENQVL ARQMREMKKV LGTEDELAMS 180
PENSFGSKQP ETLRLLK*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in the negative regulation of flowering time in short days, probably through the photoperiodic and vernalization pathways. Prevents premature flowering, particularly in the cv. Landsberg erecta background. In non-inductive photoperiods (e.g. short days), required for flowering through VIL2-mediated maintenance of the epigenetically repressed state of MAF5 via H3K9me2 and plant homeodomain / polycomb repressive complex 2 (PHD-PRC2)-dependent H3K27me3. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:18798874, ECO:0000269|PubMed:18852898, ECO:0000269|PubMed:20837520, ECO:0000269|PubMed:21150261, ECO:0000269|PubMed:21175890, ECO:0000269|PubMed:21398257, ECO:0000269|PubMed:22378382}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated by vernalization. Repressed by VIL2, AGL6, CLF, EMF2 and FIE via epigenetic chromatin H3K27me3 and H3K9me2 regulation during the vegetative development. {ECO:0000269|PubMed:12724541}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Conte MG,Gaillard S,Droc G,Perin C
Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.
BMC Genomics, 2008. 9: p. 183
[PMID:18426584] - Xu Y,Gan ES,Ito T
The AT-hook/PPC domain protein TEK negatively regulates floral repressors including MAF4 and MAF5.
Plant Signal Behav, 2014.
[PMID:23733063] - Liu B, et al.
Interplay of the histone methyltransferases SDG8 and SDG26 in the regulation of transcription and plant flowering and development.
Biochim. Biophys. Acta, 2016. 1859(4): p. 581-90
[PMID:26854085] - Gong X,Shen L,Peng YZ,Gan Y,Yu H
DNA Topoisomerase Iα Affects the Floral Transition.
Plant Physiol., 2017. 173(1): p. 642-654
[PMID:27837087] - Cui Z, et al.
SKIP controls flowering time via the alternative splicing of SEF pre-mRNA in Arabidopsis.
BMC Biol., 2017. 15(1): p. 80
[PMID:28893254]
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