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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.0917s0052.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 316aa MW: 35154 Da PI: 4.5142 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0917s0052.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57 | 3.3e-18 | 72 | 125 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++++ e++ +LA++l L+ rqV +WFqNrRa++k
Cagra.0917s0052.1.p 72 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWK 125
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.4 | 6.2e-41 | 71 | 163 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrls eqvk+LE++Fe ++kLeperKv+la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L +
Cagra.0917s0052.1.p 71 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLGQ 160
69*************************************************************************************999 PP
HD-ZIP_I/II 91 lke 93
+ke
Cagra.0917s0052.1.p 161 IKE 163
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MKRSRGSSDS LPAFLPIRLS TTDKQISPRP TNTGFLYSGA GDYSQMFDAL DDDGSLDDMG 60
GVGHASSTAA EKKRRLSVEQ VKALEKNFEI DNKLEPERKV KLAQELALQP RQVAIWFQNR 120
RARWKTKQLE RDYGVLKSNF DALKRSRDSL QRDNDSLLGQ IKELRAKLNV DGVNGVEENG 180
VVKAAEANET VMANNNEVIE LNQRPPPPPP HIPTEAPTSE LAYEMFSIFP RTESFREEDP 240
ADSSDSSAVL NEEYSPTTVE AAGAVAATAV EMSTTMGCFS QFVKMEEHED LFSGEEACKL 300
FADNEQWYCS DQWNS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 119 | 127 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF325054 | 0.0 | AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds. |
| GenBank | AY074293 | 0.0 | AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds. |
| GenBank | AY091340 | 0.0 | AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds. |
| GenBank | X67033 | 0.0 | X67033.1 A.thaliana mRNA Athb-5. |
