PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 266aa MW: 30000.3 Da PI: 7.2764

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0909s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.8e-08	160	207	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a++L + ++Y++sLq Cagra.0909s0019.1.p 160 SHSLAERVRRGKINERLRCLQDMVPGC----YKAMGMATMLDEIINYVQSLQ 207 8***********************8....355999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.32E-10	154	211	No hit	No description
SuperFamily	SSF47459	1.7E-16	154	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-16	156	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.364	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-6	160	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-9	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MANFENLSSE FQTIAMDIYS SITQAADLNN NNNSNLHNFQ TFHPSSTSLE SLFLHHHHQQ 60 QQQLLHIHGN SPDNSNNVSP TSSFIHSDDH SNVDETKKRK ALLHSLSSSE NSTGVSHIIN 120 TAETGTLRRG KRLKKKKEEE EGKEREVVHV RARRGQATDS HSLAERVRRG KINERLRCLQ 180 DMVPGCYKAM GMATMLDEII NYVQSLQNQV EFLSMKLTAA SSFYDFNSET DAVDSMQRAK 240 ARETVEMGRQ TRDGSPVFHL STWSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	137	RLKKKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0909s0019.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117269	0.0	AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
GenBank	AY138253	0.0	AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBank	BT005268	0.0	BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305468.2	1e-156	transcription factor BEE 1
Swissprot	Q8GZ13	1e-131	BEE1_ARATH; Transcription factor BEE 1
TrEMBL	R0GRE8	1e-154	R0GRE8_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.0909s0019.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-124	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Cagra.0909s0019.1.p

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]