PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0906s0022.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 338aa MW: 38200.2 Da PI: 6.6011

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0906s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.6e-56	21	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdee++++yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdk Cagra.0906s0022.1.p 21 LPPGFRFHPTDEEIITYYLKEKVLNSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDK 109 79***********************999.67***********99999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ kg lvg+kktLvfy+grap+gekt+Wvmheyrle Cagra.0906s0022.1.p 110 EIFKGKGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 148 9******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-63	18	173	IPR003441	NAC domain
PROSITE profile	PS51005	58.955	21	172	IPR003441	NAC domain
Pfam	PF02365	1.2E-29	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITYYLK EKVLNSRFTA VAMGEADLNK 60 CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPRGEKTNW VMHEYRLEGK YSYHNLPKSA RDEWVVCRVF HKNNPSTTSQ 180 PMTRIPIEDL TRMDSLDNID HLLDFSSLPP LIDPSFTGQT EQANFKPINP PTYNNISSSP 240 IQPHHFNSYQ SIFNHQGFGS ASGSGSTYNN DMIKMEQSLV SVSQETCLSS DVNATTAATM 300 EVSSGPVMKQ EMGMMGMVNG SKSYEDLCDL RGILWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-52	8	174	2	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0906s0022.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228369	0.0	AK228369.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-80-C22.
GenBank	BT005713	0.0	BT005713.1 Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds.
GenBank	BT006070	0.0	BT006070.1 Arabidopsis thaliana clone U20123 putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006286525.1	0.0	NAC domain-containing protein 87
Swissprot	Q9FK44	0.0	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	R0H7A3	0.0	R0H7A3_9BRAS; Uncharacterized protein
STRING	Cagra.0906s0022.1.p	0.0	(Capsella grandiflora)
STRING	XP_006286525.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	0.0	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Cagra.0906s0022.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]