PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0897s0074.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 310aa    MW: 33400.9 Da    PI: 6.7445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0897s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09163207554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Cagra.0897s0074.1.p 163 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 207
                          99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MANNNNNNPH DNISDPSVTD DFFEQILGIS NFSASSASGL SGIGGGLSGV GPPPMMLQLG  60
SGDEGNHNHM GAIGGPGPVG FHNHMFPLGL SLDQGKGHGF LKPEGVHPSG KRFQDDVVDN  120
RCSSMKPVYH GQPMTQPAPP MPHQQSTIRP RVRARRGQAT DPHSIAERLR RERIAERIRA  180
LQELVPTVNK TDRAAMIDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT EMPLSSSIED  240
ETQAVWEKWS NDGTERQVAK LMEENVGAAM QLLQSKALCI MPISLAMAIY HSQPPDTSSV  300
VKPEMNPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0897s0074.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305432.10.0transcription factor bHLH7
SwissprotQ93Y001e-173BH007_ARATH; Transcription factor bHLH7
TrEMBLR0IIQ60.0R0IIQ6_9BRAS; Uncharacterized protein
STRINGCagra.0897s0074.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-165bHLH family protein