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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.0897s0030.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 392aa MW: 45401.1 Da PI: 4.667 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0897s0030.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 59 | 1.6e-18 | 7 | 110 | 31 | 128 |
NAM 31 eevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlskkgelvglkktLvfykg 111
+++++++d+y+++Pw Lp+ v++ ++kewy+F++r k++++ +++r+ + gyW++ k+ +v+++++ ++g k+ L++++
Cagra.0897s0030.1.p 7 SDFLTTLDVYQADPWLLPH-VSNplfKKKEWYYFVPRTKRHRN--KPRRTvpprggSEGGYWRSGVKKVDVVDENKIVMGHKQPLTYHSI 93
4678999***********4.233355889********999876..45554345555789*****************************99 PP
NAM 112 rapkgektdWvmheyrl 128
+ k +kt W+m ey l
Cagra.0897s0030.1.p 94 VHGKDVKTGWLMTEYLL 110
99999**********76 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MVERKQSDFL TTLDVYQADP WLLPHVSNPL FKKKEWYYFV PRTKRHRNKP RRTVPPRGGS 60
EGGYWRSGVK KVDVVDENKI VMGHKQPLTY HSIVHGKDVK TGWLMTEYLL PKPDNEFQDL 120
VLCHIRDKTK TKVDKIVNQF PRTQPQLAHT TNNILANQLV QEAGFTGFAD EPETIMLEGQ 180
EDLDTTEQQQ DEEIPIIPLA HAQIHDDNNN NNNVMMTNQQ VQEEADLTSF ADELDMPMQM 240
LKGEKDRVVQ LKQQKLYEDM LIFSPTQSGD NNNDDKVNMM SIQLADHLIG FGDKLKTMRL 300
GRQEERDVTQ HQQKQLEEEI PIIPPTMQNN NTNDDMMAWN QKQEICELLQ PIYQAQEDWG 360
QLVDQDDTMM MIDNPNNALT LGNYELIDRT T*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
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