![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.0897s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 392aa MW: 45401.1 Da PI: 4.667 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59 | 1.6e-18 | 7 | 110 | 31 | 128 |
NAM 31 eevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlskkgelvglkktLvfykg 111 +++++++d+y+++Pw Lp+ v++ ++kewy+F++r k++++ +++r+ + gyW++ k+ +v+++++ ++g k+ L++++ Cagra.0897s0030.1.p 7 SDFLTTLDVYQADPWLLPH-VSNplfKKKEWYYFVPRTKRHRN--KPRRTvpprggSEGGYWRSGVKKVDVVDENKIVMGHKQPLTYHSI 93 4678999***********4.233355889********999876..45554345555789*****************************99 PP NAM 112 rapkgektdWvmheyrl 128 + k +kt W+m ey l Cagra.0897s0030.1.p 94 VHGKDVKTGWLMTEYLL 110 99999**********76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.05 | 1 | 128 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-25 | 8 | 127 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-8 | 24 | 109 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 392 aa Download sequence Send to blast |
MVERKQSDFL TTLDVYQADP WLLPHVSNPL FKKKEWYYFV PRTKRHRNKP RRTVPPRGGS 60 EGGYWRSGVK KVDVVDENKI VMGHKQPLTY HSIVHGKDVK TGWLMTEYLL PKPDNEFQDL 120 VLCHIRDKTK TKVDKIVNQF PRTQPQLAHT TNNILANQLV QEAGFTGFAD EPETIMLEGQ 180 EDLDTTEQQQ DEEIPIIPLA HAQIHDDNNN NNNVMMTNQQ VQEEADLTSF ADELDMPMQM 240 LKGEKDRVVQ LKQQKLYEDM LIFSPTQSGD NNNDDKVNMM SIQLADHLIG FGDKLKTMRL 300 GRQEERDVTQ HQQKQLEEEI PIIPPTMQNN NTNDDMMAWN QKQEICELLQ PIYQAQEDWG 360 QLVDQDDTMM MIDNPNNALT LGNYELIDRT T* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-13 | 10 | 128 | 52 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.0897s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645676.1 | 0.0 | NAC domain-containing protein 6 | ||||
TrEMBL | R0I9X6 | 0.0 | R0I9X6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.0897s0030.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14544 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03490.1 | 3e-35 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.0897s0030.1.p |