PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 239aa MW: 25945.4 Da PI: 4.1344

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0897s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.7	7.7e-20	74	123	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ +kr++lg+f+taeeAa+a++ a ++++g Cagra.0897s0005.1.p 74 RYRGVRKRP-WGRYAAEIRDPRK---KKRVWLGTFDTAEEAARAYDSASREFRG 123 69*****.******843...6*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	7.19E-23	74	132	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.816	74	131	IPR001471	AP2/ERF domain
CDD	cd00018	1.15E-31	74	131	No hit	No description
Pfam	PF00847	7.9E-14	74	123	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-35	74	137	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-31	74	132	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-11	75	86	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-11	97	113	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MTPQHDQENG TGGAADSREK IQEENLPGAA DNGEKIQEEK VTAGDADGKE KINEVNATGA 60 TDGGEKIEEE KEVRYRGVRK RPWGRYAAEI RDPRKKKRVW LGTFDTAEEA ARAYDSASRE 120 FRGANAITNF PLAVAGDGGS ASLTPVNNTV PLTESEMTFL LGSYDVLSPA AVAGFWRNIP 180 DAIELKDELV FPGGFEPQDM GFSIGLETPW DFEQEPEPEP EPSSAVEYEV NLDLNLGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-23	74	131	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	97	RKRPWGRYAAEIRDPRKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00124	DAP	Transfer from AT1G03800	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0897s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306056.1	1e-159	ethylene-responsive transcription factor 10
Swissprot	Q9ZWA2	2e-54	ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBL	R0I986	1e-158	R0I986_9BRAS; Uncharacterized protein
STRING	Cagra.0897s0005.1.p	1e-172	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03800.1	4e-54	ERF domain protein 10

Link Out ? help Back to Top
Phytozome	Cagra.0897s0005.1.p

Publications ? help Back to Top
Lehmeyer M, et al. Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter. Plant Biotechnol. J., 2016. 14(1): p. 61-71 [PMID:25819608]