PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0894s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 836aa    MW: 93652.1 Da    PI: 9.6778
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0894s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015779801123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  Cagra.0894s0013.1.p 779 HECPICFRVFKSGQALGGHKRSH 801
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-5731No hitNo description
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159936IPR007087Zinc finger, C2H2
PfamPF139123.7E-7931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-592119No hitNo description
SMARTSM003550.297119IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-697121IPR007087Zinc finger, C2H2
PROSITE profilePS501578.80897124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM003550.015158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SuperFamilySSF576673.72E-6164182No hitNo description
PfamPF139120.02165184IPR007087Zinc finger, C2H2
SuperFamilySSF576673.72E-6376403No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5378404IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.32381403IPR015880Zinc finger, C2H2-like
PfamPF139126.8E-4381404IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596381408IPR007087Zinc finger, C2H2
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242465492IPR007087Zinc finger, C2H2
SMARTSM003550.41465487IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280466487IPR007087Zinc finger, C2H2
PfamPF139120.0043466489IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974779801IPR007087Zinc finger, C2H2
SMARTSM003550.14779801IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-10779801IPR007087Zinc finger, C2H2
PROSITE patternPS000280781801IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MADGEEKKFV CKLCYKEFPS GKSLGGHIKI HSDHYKGNKK KRLVGQREKQ QQQQVCSHSE  60
EDEMSLDSES ESESEVSSAP TRKRSTRVID QKHKQQHSCK ECRNKFVSLK ALRAHMACHR  120
KGEEMLMDSE SDTESETSSS PTRKRSKRVM AEEHKQQLFC KVRGCGKGFV SFKAFNAHMA  180
CHSEKDTKML MDSHDSETSS DSKRERSKKV TIRLDSESFR SGSLSFGSEI DQDAVRAACI  240
LLMVNRGDSY ENIYNWVMKT RGKSSEKNSR IVKTKSSSGK KLKIFNVKSQ VLETGKVADG  300
DQLRSADDNG VIDLCDSDGS ELMNGSKKSD SDISADTNSK SHRFRDSKAP VVKKAGGGKK  360
NRKIHKCLIC FKMEQFKERK FVCKFCSKRF ACGKSLGGHI RTHMNNENSA DSDDDDSNKL  420
KMIDENGGQS SYGLRENPKK NKRFVDHRRM MALKQQHQQQ HQQLLCCREC GKGFVSSKAL  480
CGHMACHSER EKIVMDSQSD TEASSSPIRR RSKRVVVKHH HKANFLVGDN GIMNQSNSAY  540
SDASGIEPEQ QEMAMSLMLL SMDSSFKKGH NLVVNSFAES SDNNSVILET KSSSGEQLKM  600
FNVNNVEELC KKNKLNVDNQ VRSGEDNGDV LYDSDNSDSG YFRNGPKKLD SDFSVDGFLR  660
NTGFDNSKAV MGSGSGFNSS PTKQDKNWNR FRYKEGGSGS GSGSGRSSTK YDLRKSKRGF  720
PSYGRKKIKY EFTESVYDSG EYSLETDSCA DTNRTIKIHS KSPMVKKAST GAKKKSKGHE  780
CPICFRVFKS GQALGGHKRS HFIGNQEHRT LVIQHQVAHE MHTLIDLNLP APIDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0894s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934800.0AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306284.10.0uncharacterized protein LOC17900354
TrEMBLR0GTA20.0R0GTA2_9BRAS; Uncharacterized protein
STRINGCagra.0894s0013.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein