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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0891s0081.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MYB |
Protein Properties |
Length: 436aa MW: 48937.6 Da PI: 7.4586 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0891s0081.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57.5 | 3.1e-18 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +l+++vkq+G + W++I++++ gR +kqc++rw+++l
Cagra.0891s0081.1.p 107 KGQWTAEEDRKLIRLVKQHGERKWALISEKLE-GRAGKQCRERWHNHL 153
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 160 | 201 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W++eE+ lv+ + + G++ W+ Ia+ ++ gRt++++k++w+
Cagra.0891s0081.1.p 160 DGWSEEEEMVLVESHMRIGNK-WAEIAKLIP-GRTENSIKNHWN 201
56*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MEDPCLLHGA APPLTAVERF LYGQKNDALC SKKGECSRDR PIVKTKMSMI ETRSNNKENT 60 TFGQTREKHL VLNGGNRSSI GEVVPIKSAA RYSQNSTKKR PYKNLIKGQW TAEEDRKLIR 120 LVKQHGERKW ALISEKLEGR AGKQCRERWH NHLRPDIKKD GWSEEEEMVL VESHMRIGNK 180 WAEIAKLIPG RTENSIKNHW NATKRRQNSK RKHKHKRESN ADSNDSDVSP SAKRPCILQD 240 YIKSIDNNGI YKNDDENKNE NTISVISTPN LDRLIYSDGD SASSILGDPY DEELVYLQNI 300 FANHPISLEN IGLTQTSEEV TQPSSSASMI NTPNLNLDNN VGTHHQEATI AAPANTPHLA 360 SDIYLSYLLN GTTSSYLDTH FPSSSSSASS TTVEHVGHNE FLEPQANSTS ERREMDLIEM 420 LSGSIQGSNI CFPLF*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 210 | 217 | RKHKHKRE |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF371978 | 0.0 | AF371978.1 Arabidopsis thaliana putative transcription factor MYB119 (MYB119) mRNA, complete cds. |