PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MIKC_MADS

Protein Properties

Length: 346aa MW: 39109.7 Da PI: 6.523

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0887s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.6	2.1e-20	15	53	7	45
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rq t++kR++gi+KKA+ELS+LCd++v +++fs+tgk Cagra.0887s0001.1.p 15 NARQSTYAKRKHGIMKKAKELSILCDIDVVLLMFSPTGK 53 579**********************************98 PP
2	K-box	16.1	4.6e-07	116	177	24	79
K-box 24 LkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqiee 79 L ++ + Lq R ++dLe++ +l +LqqLe+ L sl +i ++K + q ++ Cagra.0887s0001.1.p 116 LSEKFRFLQtqlsdIRTRLSYWNDLENIdNLDDLQQLEHSLRLSLAQISAHKASMPQLQRQQ 177 4455555554442322366789999999679*********************9876555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-26	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.357	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.41E-23	2	92	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.22E-21	2	84	No hit	No description
PRINTS	PR00404	1.1E-14	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-17	14	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-14	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-14	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGRVKLKIKK LQSINARQST YAKRKHGIMK KAKELSILCD IDVVLLMFSP TGKASLCIGK 60 HSIGEVIAKF AQVIPQERTK RKLDSLEALR KMFVKIDHDV DISGFLDRST PAVEVLSEKF 120 RFLQTQLSDI RTRLSYWNDL ENIDNLDDLQ QLEHSLRLSL AQISAHKASM PQLQRQQLMF 180 SECKNETEID IDFGMEMEQQ LENFSWVGTD GNMNVPIKEE DPNLKLHQMY RDVTCSASSS 240 LGNYTGLFSK SSDYISAPKL EPGSIPGISA DPNVQFSSLS FLNDQKLQQL AEWNLLGSPA 300 DYYVSQILEA SYKPQLGGNN WASSDTLPYV SVFDDPLYFR PKLEK*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGRVKLKIKK LQSINARQST YAKRKHGIMK KAKELSILCD IDVVLLMFSP TGKASLCIGK  60
HSIGEVIAKF AQVIPQERTK RKLDSLEALR KMFVKIDHDV DISGFLDRST PAVEVLSEKF  120
RFLQTQLSDI RTRLSYWNDL ENIDNLDDLQ QLEHSLRLSL AQISAHKASM PQLQRQQLMF  180
SECKNETEID IDFGMEMEQQ LENFSWVGTD GNMNVPIKEE DPNLKLHQMY RDVTCSASSS  240
LGNYTGLFSK SSDYISAPKL EPGSIPGISA DPNVQFSSLS FLNDQKLQQL AEWNLLGSPA  300
DYYVSQILEA SYKPQLGGNN WASSDTLPYV SVFDDPLYFR PKLEK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0887s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB115013	0.0	AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023644135.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	6e-77	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	R0GCL8	0.0	R0GCL8_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.0887s0001.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14956	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69540.1	0.0	AGAMOUS-like 94

Link Out ? help Back to Top
Phytozome	Cagra.0887s0001.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]