PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 275aa MW: 30081.9 Da PI: 8.5635

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0882s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	109	163	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Cagra.0882s0002.1.p 109 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 163 788899***********************************************98 PP
2	HD-ZIP_I/II	122.9	1.5e-39	109	197	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++ LE+sF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en rL+ke +eL+ + Cagra.0882s0002.1.p 109 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTDENMRLRKEIQELK-T 197 69*************************************************************************************9.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.086	105	165	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-17	106	168	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-15	107	169	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.64E-18	107	173	IPR009057	Homeodomain-like
CDD	cd00086	1.19E-16	109	166	No hit	No description
Pfam	PF00046	1.1E-15	109	163	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	140	163	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.2E-10	165	197	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	7.0E-21	165	211	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSYDDSCNSG LVLGLGLSPT PNNYNAIKRS SGYKLEPSLT LSLSGDPLLT LVAGADQLCR 60 QTSSLSGVSS FSSGRVVKRE RYGGEESPEE EEETTKRVIS EDEEGVSARK KLRLTKEQSS 120 RLEDSFKHHS TLNPKQKQVL ARQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEILKKCCET 180 LTDENMRLRK EIQELKTLSL TNHHQPFYMH MSTNPTLTIC PSCEIIIAGG GNGGGGGGSV 240 ANTVVVDGGK AKGAFSISSK PHFFNPYTNP SAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	165	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0882s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294654.2	1e-173	homeobox-leucine zipper protein HAT9
Swissprot	P46603	1e-130	HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBL	R0FX48	1e-171	R0FX48_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.0882s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	1e-131	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.0882s0002.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]