PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0846s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 239aa    MW: 26727 Da    PI: 6.1492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0846s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.76.2e-4261372128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          + GfrF Pt++elv +yL++++eg++ +++++vi+ +d+++veP++Lp+    ++++++++w+fF++r++++a+g r++r+t sgyWkat
  Cagra.0846s0014.1.p   6 TIGFRFYPTEDELVAFYLRNQLEGRSdVSVHRVIPVLDVFDVEPSHLPNiageRCRGDTEQWFFFVPRQEREARGGRPSRTTGSGYWKAT 95 
                          57**********************997788889***************656666666888****************************** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g+  +v+s +++ +g+kkt+vfy+g+ap+g+kt+W m+ey++
  Cagra.0846s0014.1.p  96 GSPGPVFSVDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137
                          ****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.0455162IPR003441NAC domain
SuperFamilySSF1019413.4E-465161IPR003441NAC domain
PfamPF023651.2E-227136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MADEVTIGFR FYPTEDELVA FYLRNQLEGR SDVSVHRVIP VLDVFDVEPS HLPNIAGERC  60
RGDTEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSVDNRMIG VKKTMVFYTG  120
KAPTGRKTKW KMNEYKAVDE TVNSTTIPKL RHEFSLCRVY ITTGSSRAFD RRPSVGVLQT  180
ERMPTSDVAV AGTSSFRVEG SPETSISGGE HVDLSTNIDF VEGGLTESIW EWEPLSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-32816723173NAC domain-containing protein 19
3swm_B4e-32816723173NAC domain-containing protein 19
3swm_C4e-32816723173NAC domain-containing protein 19
3swm_D4e-32816723173NAC domain-containing protein 19
3swp_A4e-32816723173NAC domain-containing protein 19
3swp_B4e-32816723173NAC domain-containing protein 19
3swp_C4e-32816723173NAC domain-containing protein 19
3swp_D4e-32816723173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0846s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758060.0AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBankAY0869440.0AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288518.21e-175NAC domain-containing protein 90
SwissprotQ9FMR31e-146NAC90_ARATH; NAC domain-containing protein 90
TrEMBLR0FHF51e-174R0FHF5_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0846s0014.1.p1e-175(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-137NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]