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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0839s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 259aa MW: 28340.9 Da PI: 6.9639 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.4 | 7.2e-09 | 85 | 131 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N +L k+l+ Cagra.0839s0005.1.p 85 KSKKRPLGNREAVRKYREKKKAKAASLEDEVMRLRAVNNQLMKRLQG 131 66788899**********************************99974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.0E-14 | 78 | 149 | No hit | No description |
SMART | SM00338 | 7.4E-10 | 81 | 148 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.806 | 83 | 130 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.1E-14 | 84 | 138 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.95E-7 | 86 | 130 | No hit | No description |
CDD | cd14686 | 6.89E-11 | 89 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDDGELEFSN SNMGGELPLT SCSMDSFFDE LLRDSHACTH THTCNPSGPE NTHTHTCLHV 60 HTKILPAQSE DKVSTDDTSE SSGKKSKKRP LGNREAVRKY REKKKAKAAS LEDEVMRLRA 120 VNNQLMKRLQ GQAALEAEVT RLKCLLVDIR GRIDGEIGSF PYQKPAAANV PYSYMMHPCN 180 MQCDVDNMYC LQNGNNGEGT LMNEQGLNGC EFDQLECLAN QNLAGKEIPL CSNGVGTFTV 240 NGSSTNKRKG GHRAAKAV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0839s0005.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117479 | 0.0 | AK117479.1 Arabidopsis thaliana At2g16770 mRNA for putative bzip transcription factor atbzip23, complete cds, clone: RAFL17-09-E13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298365.1 | 0.0 | basic leucine zipper 23 | ||||
Refseq | XP_023641855.1 | 0.0 | basic leucine zipper 23 | ||||
Swissprot | Q8GTS2 | 1e-173 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | R0HNF1 | 0.0 | R0HNF1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0839s0005.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006298365.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2036 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 1e-169 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0839s0005.1.p |
Publications ? help Back to Top | |||
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