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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0834s0027.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NAC |
Protein Properties |
Length: 560aa MW: 63200.6 Da PI: 4.2297 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0834s0027.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 165.8 | 1.6e-51 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
l+pGfrFhPtdeelv +yLk+k+ +k++++ ++i+ +++yk+ePwdLp k k+k+++ ewyfFs+ d+ky +g+++nrat+ gyWk+tgk
Cagra.0834s0027.1.p 9 LAPGFRFHPTDEELVRYYLKRKICNKPFKF-DAISVAHVYKSEPWDLPdKsKLKSRDLEWYFFSTLDSKYGNGSKTNRATEMGYWKTTGK 97
579**************************9.99**************95347777888******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d+e+ + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl
Cagra.0834s0027.1.p 98 DREIRN-GSKVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 136
*****9.9******************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009819 | Biological Process | drought recovery |
GO:0010150 | Biological Process | leaf senescence |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0005886 | Cellular Component | plasma membrane |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 560 aa
Download sequence Send
to blast |
MGGGSATSLA PGFRFHPTDE ELVRYYLKRK ICNKPFKFDA ISVAHVYKSE PWDLPDKSKL 60 KSRDLEWYFF STLDSKYGNG SKTNRATEMG YWKTTGKDRE IRNGSKVVGM KKTLVYHKGR 120 APRGERTNWV MHEYRLVDEE LEITGVHQDA YVLCRIFQKS GSGPKNGEQY GAPFVEEEWE 180 EEEDDLSFEP DPDLGSEDHV YVHMDDTDQK PDNLVVYDAI PLPLNFNHEE SSNNAETNYS 240 DSINYIQPGN YVDSGGYFEK PEESSEKDQK PIICDGNLHN EALFQDDEIG SGVQNEQMAN 300 LQSSDNMFGT GSLCYNDFSV ESNYLTGDAF LDPNSNLLQN DGLYLETNDL SSTQQDGFHF 360 EDYLTFFDED DENAQNLTFD PSQLMGNEDA FVDQEELFQE IETEELKKEE TIGDKQVVEE 420 KEKDEASCSK QVDADATEFE PDYKYPFLKK ASNMLGAIPA PPAFASEFPT KDAVIRLNAG 480 QSSGSVHVTA GMITISDSNM GWAYDKNANR DLILSYHFVQ ENASGKLGNS LTRAMLIFMC 540 FWILLLSVSF KVSTLVASR*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-44 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-44 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:24323506, ECO:0000269|PubMed:25219309, ECO:0000269|Ref.6}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:22313226, PubMed:25219309). Induced by heat shock (PubMed:25219309). Induced by cold, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:25219309}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY051003 | 0.0 | AY051003.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds. |
GenBank | AY079345 | 0.0 | AY079345.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] - Gladman NP,Marshall RS,Lee KH,Vierstra RD
The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis. Plant Cell, 2016. 28(6): p. 1279-96 [PMID:27194708] - Sanz-Fernández M, et al.
Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]
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