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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0805s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Nin-like | ||||||||
Protein Properties | Length: 918aa MW: 101565 Da PI: 4.6772 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.2 | 3.4e-28 | 614 | 664 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Cagra.0805s0015.1.p 614 EKTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 664 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.961 | 603 | 684 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-25 | 617 | 664 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 6.17E-22 | 809 | 902 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 4.4E-23 | 818 | 899 | No hit | No description |
PROSITE profile | PS51745 | 24.319 | 819 | 902 | IPR000270 | PB1 domain |
SMART | SM00666 | 5.8E-24 | 819 | 902 | IPR000270 | PB1 domain |
Pfam | PF00564 | 9.5E-16 | 820 | 901 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.63E-40 | 820 | 901 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 918 aa Download sequence Send to blast |
MEDDAGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDS KSLKQTEQSG 60 SASTAMNDNS TFLCFGENPS QDNFSLEETE NNKSMNQEPF DQAEKFLLEE AEVGKSWWIA 120 PRASEGASSS VKERLLQAIS GLNEAVQDKD FLVQIWVPIQ QEGKSFLTTW AQPHLFNQEY 180 SSLAEYRHVS ETYNFPADEG LNDFVGLPGR VFLQKLPEWT PDVRFFRRDE YPRIKEAQKC 240 DVRGSLALPV FERGSGTCLG VVEIVTTTQK MNYRQELEKM CKALEAVDLR SSSNLNTPSS 300 EFLQVYSDFY CAALPEIKDF LATVCRLYDL PLALSWAPCA PQGKHGSRHS DDNFSQCVST 360 TDSACSVLDE QSKSFWEACS EHHLLQGEGI VGKAFKATKL FFVPEVTTFS KTNYPLAHHA 420 KISGLHAALA VPLKSKSGLV EFVLEFFFPK ACLDTEAQQE MLKSLSVTLQ QNFRSSNLVI 480 DKDLELEVVL PVRETMLFSE NPQSGAETTE TLTEIEMQES SWISHMIKAN EKGKGVSLSW 540 EYQKEDPKEL SSGRENTLID PSPNNVPLEA EQLQQASTSG LRVDSGPSTK SPSTGGGNML 600 GSRRPGDKRR TKTEKTIGLE VLRQHFAGSL KDAAKSIGVC PTTLKRICRQ HGIMRWPSRK 660 IKKVGHSLKK LQLVMDSVQG AEGSIQLDSF YTSFPELNSP NMSSNVPSLK SNEQSSHLKA 720 QSENDMAEEN TAPRSPSSSC SKSSGSSNNN ENTANVLVSE DANAALERDH SEAELHQVNQ 780 EETIFPARTQ SHNTFNEPPV LENSPLIPGS SNKSLRGGAI KVKATFGEAR IRFTLLPSSG 840 FRELQQDIAR RFNIDDISLF DLKYLDDDEE WVLLTCEADL EECIDIYRLT QTQTIRISLN 900 EAFQVKLGGS FGSTGPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0805s0015.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY090943 | 0.0 | AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296934.1 | 0.0 | protein NLP1 | ||||
Refseq | XP_023642545.1 | 0.0 | protein NLP1 | ||||
Swissprot | Q8H111 | 0.0 | NLP1_ARATH; Protein NLP1 | ||||
TrEMBL | R0G2Z6 | 0.0 | R0G2Z6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0805s0015.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17150.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0805s0015.1.p |
Publications ? help Back to Top | |||
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