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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0799s0025.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 337aa MW: 37377.7 Da PI: 7.1644 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0799s0025.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 227.5 | 2.5e-70 | 104 | 272 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel............. 78
r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re
Cagra.0799s0025.1.p 104 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdnnnnddkdh 193
7899*********************************************************99999555555555555555555555544 PP
DUF702 79 kskkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
+ sal++t++++++s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++
Cagra.0799s0025.1.p 194 SGGGGSALANTRVVNTNSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 272
7788899*************9998776*******************98535567***********************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MAGFFYLGGR DNNSKQDHHQ DKNYLYLYKD EIYNNNKGFE IWPPQYFQQQ EQPQQQQHAS 60 APANFYSFGM VPSGSSSNNN NSRSRSLYFN VVSDHEPGGF TVTRQGGMNC QDCGNQAKKD 120 CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSTSSRE TQNTKRLREA 180 SGGDNNNNDD KDHSGGGGSA LANTRVVNTN SNSGLEVSQH LPPEVNSPAV FRCVRVSSIE 240 EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHHHHH LNLLASTATT TNVEETATKT 300 VAGNNSNGLM LDPSSLYPAQ LNSFIAGTSF FTPPRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY800620 | 0.0 | AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds. |
GenBank | AY924730 | 0.0 | AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds. |