PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0799s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 440aa    MW: 47313.7 Da    PI: 8.4683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0799s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.7e-12326327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          elCr+f+r G C+yG++C+F H++
  Cagra.0799s0006.1.p  3 KELCRNFQR-GSCRYGENCRFLHPQ 26
                         69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-8126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.15127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8326IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGSQS QQQPQQPKSS NPFGFGVQSG  60
GGGSSRPNQF QPFENTWSRP ASTPTGGASA QKTGKQAQST DHKCTDPAVC KRIMQDDFKN  120
ERPMWKLTCY GHWKYYPCDV TGDISYEELR AIAYEEAKRG IPLQSIVERE RNLQNSKIAE  180
FENFLRNPYK GSVTANQSPF AATTPSIFPP TNQINSSPPA FSGFNQQTAF PNTNAGGLSS  240
SGPPNAFASF SQQSNNQQTT FPNTNAGGVS SSGPPNPFAS FNQQTNNQQT AFPNTNVGGV  300
SSSGPPNAFA SFNQQPNAFS VNTPQPVSSG PSGFQTNPST LFKPASFGPG PGLATAPQNN  360
NIFSRSTPMP ALNTSQNNQT AFNFNVPVAS FTASGVDATN TSSGTELQIE GEPVDSSIWL  420
KEKWNPGEIP EQAPPDAFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0799s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301893.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLR0GGF70.0R0GGF7_9BRAS; Uncharacterized protein
STRINGCagra.0799s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.10.0C3H family protein