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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.0751s0023.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
bHLH |
| Protein Properties |
Length: 603aa MW: 66027.1 Da PI: 4.9873 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0751s0023.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 39.4 | 1.1e-12 | 427 | 472 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L
Cagra.0751s0023.1.p 427 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 472
799***********************6.....5***************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006952 | Biological Process | defense response |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043425 | Molecular Function | bHLH transcription factor binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 603 aa
Download sequence Send
to blast |
MNGTASSINF LTTTDDDPSA AMEAFIGTNQ HSSIFPPPPP QPQPLLPQFN EDTLQQRLQA 60
LIESAGENWT YAIFWQISHD FDSSTGENTV ILGWGDGYYK GEEDKEKKKN NTNTAEQEHR 120
KRVIRELNSL ISGGIGVSDE SNDEEVTDTE WFFLVSMTQS FVNGVGLPGE SFLNSRVIWL 180
SGSGALTGSG CERAGQGQIY GLKTMVCIAA QNGVVELGSS EVISQSSDLM DKVNNLFNSN 240
NGGNNGEACS WGFNLNPDQG ENDPALWISE PATNTGIESP ARVNGNNSNS NSKSDSHQIS 300
KLEKNDISSV ENLNRQSPCL GERDLNFSSS GLNKNGNFQG GLKSNETLSF CGNERNKKRS 360
VVSKGSNNDE GMLSFSTVVR STAKSGDSDH SDLEASVVKE AIVVEPPEKK PRKRGRKPAN 420
GREEPLNHVE AERQRREKLN QRFYSLRAVV PNVSKMDKAS LLGDAISYIN ELKSKLQQAE 480
IDKEEIQKRL DGVNKEGNGK GGSRAKERKS SNQDSSGSSI EMEIDVKIIG WDVMIRVQCS 540
KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE 600
TY*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 408 | 416 | KKPRKRGRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB016882 | 0.0 | AB016882.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Chico JM, et al.
Repression of Jasmonate-Dependent Defenses by Shade Involves Differential Regulation of Protein Stability of MYC Transcription Factors and Their JAZ Repressors in Arabidopsis.
Plant Cell, 2014. 26(5): p. 1967-1980
[PMID:24824488] - Gasperini D, et al.
Multilayered Organization of Jasmonate Signalling in the Regulation of Root Growth.
PLoS Genet., 2015. 11(6): p. e1005300
[PMID:26070206] - Qi T, et al.
Regulation of Jasmonate-Induced Leaf Senescence by Antagonism between bHLH Subgroup IIIe and IIId Factors in Arabidopsis.
Plant Cell, 2015. 27(6): p. 1634-49
[PMID:26071420] - de Torres Zabala M, et al.
Novel JAZ co-operativity and unexpected JA dynamics underpin Arabidopsis defence responses to Pseudomonas syringae infection.
New Phytol., 2016. 209(3): p. 1120-34
[PMID:26428397] - Yu J, et al.
JAZ7 negatively regulates dark-induced leaf senescence in Arabidopsis.
J. Exp. Bot., 2016. 67(3): p. 751-62
[PMID:26547795] - Chen X,Huang H,Qi T,Liu B,Song S
New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
Plant Signal Behav, 2016. 11(2): p. e1135280
[PMID:26829586] - Schmiesing A,Emonet A,Gouhier-Darimont C,Reymond P
Arabidopsis MYC Transcription Factors Are the Target of Hormonal Salicylic Acid/Jasmonic Acid Cross Talk in Response to Pieris brassicae Egg Extract.
Plant Physiol., 2016. 170(4): p. 2432-43
[PMID:26884488] - Thatcher LF, et al.
Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
J. Exp. Bot., 2016. 67(8): p. 2367-86
[PMID:26896849] - Gao C, et al.
MYC2, MYC3, and MYC4 function redundantly in seed storage protein accumulation in Arabidopsis.
Plant Physiol. Biochem., 2016. 108: p. 63-70
[PMID:27415132] - Gimenez-Ibanez S, et al.
JAZ2 controls stomata dynamics during bacterial invasion.
New Phytol., 2017. 213(3): p. 1378-1392
[PMID:28005270] - Zhang F, et al.
Structural insights into alternative splicing-mediated desensitization of jasmonate signaling.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(7): p. 1720-1725
[PMID:28137867] - Lian TF,Xu YP,Li LF,Su XD
Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA.
Cell Rep, 2017. 19(7): p. 1334-1342
[PMID:28514654] - Wang H, et al.
The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis.
Mol Plant, 2017. 10(11): p. 1461-1464
[PMID:28827172] - Song S, et al.
MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
Plant Cell Physiol., 2017. 58(10): p. 1752-1763
[PMID:29017003] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470] - Han X, et al.
Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
Plant Physiol., 2018. 176(4): p. 2871-2885
[PMID:29496884]
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