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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0751s0016.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
bHLH |
Protein Properties |
Length: 474aa MW: 53241.4 Da PI: 6.9504 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0751s0016.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 39.1 | 1.3e-12 | 305 | 350 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er RR+++N++f Lr ++P+ K++K + Le Av+YI++L
Cagra.0751s0016.1.p 305 NHVEAERMRREKLNNRFYALRAVVPNV-----SKMDKTSLLEDAVRYINEL 350
799***********************6.....5***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MNNDENLSMI EALLTSDVWP PPPLPPANNL SLETTIQKRL HNVLNGTHVL WTYAVFWKPS 60 YNLLSGDSVL KWGDGVYNGG DEEKNGRRMR RRKKTVPSSP EGKERRSKVL RELNSMISGE 120 PFPLVEVDDV NDDDDDDVEV TDTEWYYLVS MTWSSCNGSG LAGKAFDTCN PVWVTGLDQI 180 YGSGCDRAKQ GGGLGLQTVV CIPLDNGVLE LGSTELIRQN SDLFNKIRFL FHFEGSKDLS 240 GAPTSTQFRS RIHNPNTNPS PVYQPIQMNI SGEEFNRINA TVIPEKKPAK KRGRKPNHGR 300 EKPLNHVEAE RMRREKLNNR FYALRAVVPN VSKMDKTSLL EDAVRYINEL KSKAENSESG 360 KSAVEIQLKE LKKVMELQNA TSSSVCNDKE KKLSELKMEV KVMGSDVMIR VESGKRNHPG 420 ARFMNALMDL ELEVNHASIS VMNDLMIQQA TVEMGLRIYE QEQLKDTLLS KIS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 5e-43 | 33 | 233 | 6 | 194 | Transcription factor MYC3 |
4rqw_B | 5e-43 | 33 | 233 | 6 | 194 | Transcription factor MYC3 |
4rs9_A | 5e-43 | 33 | 233 | 6 | 194 | Transcription factor MYC3 |
4yz6_A | 5e-43 | 33 | 233 | 6 | 194 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Chen X,Huang H,Qi T,Liu B,Song S
New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] - Song S, et al.
MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]
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