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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.0736s0042.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
GRAS |
| Protein Properties |
Length: 511aa MW: 57213.3 Da PI: 4.9731 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0736s0042.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 262.4 | 1.5e-80 | 145 | 510 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsev 87
++lL cA a++s++ +++q++L+ lselas++gd+++Rlaa+ ++AL+++l++ s s+ + p+ + + s+e+ +++k+ f+ev
Cagra.0736s0042.1.p 145 EQLLNPCALAITSRNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSsSFSSS--SSPVVTFA---SAEAKMFQKTllkFYEV 229
689**************************************************9222333..33444444...3344444444457**** PP
GRAS 88 sPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLak 167
sP++ + + +aN+aIl+ ++++ + +Hi+D+++s+G+QWp+Ll+aL Rpegpp ++RiT+v++p+s+ ++g +L
Cagra.0736s0042.1.p 230 SPWFALPNNMANSAILQILAQDpidkkKDLHIVDIGVSHGMQWPTLLEALRGRPEGPPhRVRITVVSDPSSDipfsAVPPAYSYGTQLIG 319
*****************9988777766889************************888868***********9*99888999********* PP
GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFler 256
fA++l+++++++v+ +++ ++++p+E+l+V+++++lh+l +s+ +er e L +++sl Pk vv++e++ ++ + ++F+++
Cagra.0736s0042.1.p 320 FARSLNINLKISVF-------DKFQLINTSPHENLIVCVQFRLHQLT---HSMLDERGEALIALRSLGPKGVVLCENNGECtSIGDFAAG 399
************96.......4568889******************8...77777889***********************7789***** PP
GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
f+ +ley ++++ds+++++ +e+ + Er+l+++e+++v+++ +e +ekW er+ +aGF + +++e+a + ak+llrk+++
Cagra.0736s0042.1.p 400 FSMKLEYLWKFLDSTSSGF----KEEDSEERKLMEEEATKVLMTGDYV----NEGKEKWYERMIKAGFAAEEFGEDAIDGAKSLLRKYDN 481
***************9997....67777788888899***99998887....999**********************************4 PP
GRAS 347 dgyrve.eesgslv.lgWkdrpLvsvSaWr 374
+ +++ e+ g++ l+Wk++++ ++S W+
Cagra.0736s0042.1.p 482 N-WEIRmEDGGTFAgLMWKGESVSFCSLWK 510
4.6666344444447**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042446 | Biological Process | hormone biosynthetic process |
| GO:2000032 | Biological Process | regulation of secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 511 aa
Download sequence Send
to blast |
MSLEETEPVN QTLDHVLGWL EDSMSLTPLP EFDDSDLLHE FDGSQTWEWD QTQDPEHGFI 60
QSYSQDLSAC GGFEATNLEL VSEAPFMYSD PPPQLQQPND QSRKRSSNEL IQPQHVKRSA 120
RSKKKSNKSS EKSCKDGNKE ERWAEQLLNP CALAITSRNS SRVQHYLCVL SELASSSGDA 180
NRRLAAFGLR ALQHHLSSSS FSSSSSPVVT FASAEAKMFQ KTLLKFYEVS PWFALPNNMA 240
NSAILQILAQ DPIDKKKDLH IVDIGVSHGM QWPTLLEALR GRPEGPPHRV RITVVSDPSS 300
DIPFSAVPPA YSYGTQLIGF ARSLNINLKI SVFDKFQLIN TSPHENLIVC VQFRLHQLTH 360
SMLDERGEAL IALRSLGPKG VVLCENNGEC TSIGDFAAGF SMKLEYLWKF LDSTSSGFKE 420
EDSEERKLME EEATKVLMTG DYVNEGKEKW YERMIKAGFA AEEFGEDAID GAKSLLRKYD 480
NNWEIRMEDG GTFAGLMWKG ESVSFCSLWK *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |
