PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0736s0019.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 512aa    MW: 56565.7 Da    PI: 8.5533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0736s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0599121123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Cagra.0736s0019.1.p  99 FVCEICNKGFQRDQNLQLHRRGH 121
                          89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.96E-698121No hitNo description
PfamPF121718.2E-599121IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94999121IPR007087Zinc finger, C2H2
SMARTSM003550.01799121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM00355220141171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.96E-6171196No hitNo description
SMARTSM00355180176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MMNKADMLLH QHHHQPQQDE NMSNLTSASG DQASVSSGNI TEASGSNYFP HHQQQQQQEQ  60
FCLPDSQPQK KRRNQPGNPD PESEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG  120
HNLPWKLKQR SNKEVIRKKV YVCPEATCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK  180
CSKKYAVQSD CKAHSKTCGT KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVLPQN  240
QNNQQNPLLI HQSSSYPHQH QSTQPNINVS SSSSSSHNII NSLHFEHANN GTSHGNSSSN  300
HLHTFSMKKE QQSNDHNISY HHSIPPWLAP HPRDLTSSNP NPSNGGGGGL FSLASPAMSA  360
TALLQKAAQM GSTKTPPLPP TTGFERSTHN KNLTTTMAPM MTSPSAFNDN NSQVMFQDYN  420
ASGFDHQGGE EAFEETFGGF LRTNEATAAR SDKSKSGGGE GLTRDFLGLR PLMSHNEILS  480
FAGLGNCINS SASEQLHPKP WQGTQVGSNK G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32172240371Zinc finger protein JACKDAW
5b3h_F1e-32172240371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125138KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0736s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642314.10.0protein indeterminate-domain 11 isoform X2
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLR0G2R10.0R0G2R1_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0736s0019.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]