PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0712s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 307aa    MW: 33923.6 Da    PI: 6.7112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0712s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-193383256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                          ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAaka+++a+kkl+g+
  Cagra.0712s0008.1.p 33 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAKAYDEAAKKLYGH 83
                         69****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.91E-283288No hitNo description
Gene3DG3DSA:3.30.730.101.5E-283389IPR001471AP2/ERF domain
SMARTSM003802.7E-333396IPR001471AP2/ERF domain
PROSITE profilePS5103220.5473390IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-193389IPR016177DNA-binding domain
PfamPF008474.0E-143483IPR001471AP2/ERF domain
PRINTSPR003672.1E-93445IPR001471AP2/ERF domain
PRINTSPR003672.1E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVEAA KAYDEAAKKL YGHEAKLNLL HPQQQQQQQQ QVVNRNLSFS GHGSGSWSYK  120
LDTVRGLDLG LGPVSGSRGS WSGRSSFLQE DDDHHYDRCL PSSDSNLCWL LPKQSDSKGQ  180
ESVDAASGGR GEGGGGSSLT FSTTLKPMVN PNYGVSNGAW SRFLVGQEKK TEHDVSSSCG  240
SSDNKESMLV PSSGVERLHK PEMEEGTGYL EMDDLLEIDD LGLLIGKNGD FKNWCCEEFQ  300
HPWNWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-143489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-1434911573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195GGRGEGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0712s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516260.0AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608530.0AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260740.0BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289041.10.0dehydration-responsive element-binding protein 2G
SwissprotP618271e-179DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLR0GYH00.0R0GYH0_9BRAS; Uncharacterized protein
STRINGCagra.0712s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-148ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]