PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 159aa MW: 17394.8 Da PI: 10.25

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0706s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.5	6.7e-18	22	70	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g Cagra.0706s0004.1.p 22 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 70 8***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.484	21	78	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-36	21	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-8	22	33	IPR001471	AP2/ERF domain
CDD	cd00018	3.44E-27	22	80	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-29	22	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.49E-21	22	79	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-11	22	70	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-8	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0010941	Biological Process	regulation of cell death
GO:0042742	Biological Process	defense response to bacterium
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDGGAAAAVD VGAGARKRER PFKGIRMRKW GKWVAEIREP NKRSRLWLGS YSTPEAAARA 60 YDTAVFYLRG PTATLNFPEL LPCIENSAAE DMSAATIRRK ATEVGAQVDA IGTTVVQNNK 120 RRRVFSQKGD FGGGLLMKLV DLNKLPEPEH HDDNLVVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-15	22	79	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	123	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00401	DAP	Transfer from AT3G50260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0706s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291976.1	1e-112	ethylene-responsive transcription factor ERF011
Swissprot	Q9SNE1	7e-90	ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBL	R0H6F6	1e-111	R0H6F6_9BRAS; Uncharacterized protein
STRING	Cagra.0706s0004.1.p	1e-113	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50260.1	1e-89	cooperatively regulated by ethylene and jasmonate 1

Link Out ? help Back to Top
Phytozome	Cagra.0706s0004.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shen PC,Hour AL,Liu LD Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis. Bot Stud, 2017. 58(1): p. 22 [PMID:28510204]