PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0701s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 281aa    MW: 32526.9 Da    PI: 6.9588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0701s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-11371171499
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++ ++p k + +  g    +  +++  ++ +sW++ l  ++ ++  ++ ++ W+eFv++n+L  +D++ F++d++++f   v++f++
  Cagra.0701s0008.1.p  37 SMRIIPEKIVGSTPGA--FEHRVVFSVRWENSWQLWL--ERDKDDlFMQEEDWNEFVDDNHLGPNDILFFRHDDTMDF--EVQIFKN 117
                          4446777777666444..334699999**********..88888868888*********************9999999..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1518119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1519119IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-921116No hitNo description
SMARTSM010191.0E-1423118IPR003340B3 DNA binding domain
PROSITE profilePS5086310.53224118IPR003340B3 DNA binding domain
PfamPF023624.6E-936117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-9178268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-7179268IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.0E-4185275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKKNMLPKSV VDKLQENVSK PCFWKSLSPG QNWKSKSMRI IPEKIVGSTP GAFEHRVVFS  60
VRWENSWQLW LERDKDDLFM QEEDWNEFVD DNHLGPNDIL FFRHDDTMDF EVQIFKNNGH  120
EIMDVPLEVE PETEPLHHKP QNSHKETVTV SASGSENGGT NGRGRHRRDV MNPMRYLLNP  180
ENPHFVKVVT KRNDVLYMSR PVIHSYRLKF GPLHSTIDFL LPGGQKEEGI LRFYNGQPCF  240
SGWSVVCRKY KLNVGDYVVC EIERSGSLVT GVRVHFVNED *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAPTransfer from AT5G25475Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0701s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289143.20.0B3 domain-containing protein At5g25475
SwissprotQ680D91e-152Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLR0FJ180.0R0FJ18_9BRAS; Uncharacterized protein
STRINGCagra.0701s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-138B3 family protein