 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.0684s0047.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HRT-like |
| Protein Properties |
Length: 364aa MW: 40298.9 Da PI: 8.9569 |
| Description |
HRT-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0684s0047.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HRT-like | 53.1 | 5.4e-17 | 169 | 197 | 2 | 30 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30
CGv+ledG++C+++PvkgR+RC eHKG+R
Cagra.0684s0047.1.p 169 CGVLLEDGTTCTTTPVKGRQRCTEHKGKR 197
****************************9 PP
|
| 2 | HRT-like | 47.1 | 4e-15 | 215 | 245 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31
iCGvil d C+r+Pv RKRCe HKGmR+
Cagra.0684s0047.1.p 215 ICGVILPDMVRCRRPPVLRRKRCEDHKGMRV 245
8*****************************7 PP
|
| 3 | HRT-like | 25.6 | 2.2e-08 | 285 | 312 | 2 | 29 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGm 29
C +++ +G +C+r + kg K C++HK++
Cagra.0684s0047.1.p 285 CEATTTNGLPCTRRAPKGSKKCWQHKDK 312
9*************************86 PP
|
| 4 | HRT-like | 63.8 | 2.4e-20 | 331 | 361 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31
iCGv+l +GsvC++ PvkgRKRCeeHKGmR+
Cagra.0684s0047.1.p 331 ICGVKLYNGSVCEKAPVKGRKRCEEHKGMRV 361
8*****************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
QIRVGASDKE NFRKGKDCVG RYRVQGAFPG LSDLGVGVIC HDQGRKDVKD DDVLLANLGQ 60
AESIRYRLRS YGRSIAQQDL LKKLGDSVFM NPRKSGLSET ILPVTQKRTS NKTEENKPDS 120
VEEIEISSDA AEKESNLLPS ILRLSRSRPQ PVSETHDDIV DGSNSASGCG VLLEDGTTCT 180
TTPVKGRQRC TEHKGKRRIP CEVPTTRECE QADEICGVIL PDMVRCRRPP VLRRKRCEDH 240
KGMRVNAFFF LLNPTELEKA VKEEKSKPKT CTGMNEEDSG LNLLCEATTT NGLPCTRRAP 300
KGSKKCWQHK DKTVSHRSSE NVQSATISQV ICGVKLYNGS VCEKAPVKGR KRCEEHKGMR 360
VTS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL049171 | 1e-145 | AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project). |
| GenBank | AL049483 | 1e-145 | AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project). |
| GenBank | AL161564 | 1e-145 | AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64. |
| GenBank | CP002687 | 1e-145 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
