PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0684s0047.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HRT-like
Protein Properties Length: 364aa    MW: 40298.9 Da    PI: 8.9569
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0684s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.15.4e-17169197230
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                          CGv+ledG++C+++PvkgR+RC eHKG+R
  Cagra.0684s0047.1.p 169 CGVLLEDGTTCTTTPVKGRQRCTEHKGKR 197
                          ****************************9 PP
2HRT-like47.14e-15215245131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCGvil d   C+r+Pv  RKRCe HKGmR+
  Cagra.0684s0047.1.p 215 ICGVILPDMVRCRRPPVLRRKRCEDHKGMRV 245
                          8*****************************7 PP
3HRT-like25.62.2e-08285312229
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 
                          C +++ +G +C+r + kg K C++HK++
  Cagra.0684s0047.1.p 285 CEATTTNGLPCTRRAPKGSKKCWQHKDK 312
                          9*************************86 PP
4HRT-like63.82.4e-20331361131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCGv+l +GsvC++ PvkgRKRCeeHKGmR+
  Cagra.0684s0047.1.p 331 ICGVKLYNGSVCEKAPVKGRKRCEEHKGMRV 361
                          8*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
QIRVGASDKE NFRKGKDCVG RYRVQGAFPG LSDLGVGVIC HDQGRKDVKD DDVLLANLGQ  60
AESIRYRLRS YGRSIAQQDL LKKLGDSVFM NPRKSGLSET ILPVTQKRTS NKTEENKPDS  120
VEEIEISSDA AEKESNLLPS ILRLSRSRPQ PVSETHDDIV DGSNSASGCG VLLEDGTTCT  180
TTPVKGRQRC TEHKGKRRIP CEVPTTRECE QADEICGVIL PDMVRCRRPP VLRRKRCEDH  240
KGMRVNAFFF LLNPTELEKA VKEEKSKPKT CTGMNEEDSG LNLLCEATTT NGLPCTRRAP  300
KGSKKCWQHK DKTVSHRSSE NVQSATISQV ICGVKLYNGS VCEKAPVKGR KRCEEHKGMR  360
VTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0684s0047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0491711e-145AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project).
GenBankAL0494831e-145AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615641e-145AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026871e-145CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283810.10.0protein EFFECTOR OF TRANSCRIPTION 1
SwissprotF4JU691e-171ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1
TrEMBLR0GZV00.0R0GZV0_9BRAS; Uncharacterized protein
STRINGCagra.0684s0047.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-150