PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0664s0066.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 282aa    MW: 32702.8 Da    PI: 5.141
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0664s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35281202103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d+++++++sws++g sfvv+d+ +f+ ++Lp yFkh+nf+SFvRQLn+YgF+k+++e+         weF ++ F  g++
  Cagra.0664s0066.1.p  28 FLAKTYEMVDDPNTNNIVSWSREGISFVVWDPYSFSASILPLYFKHNNFSSFVRQLNTYGFRKIETER---------WEFMNEGFLMGQR 108
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr++s+
  Cagra.0664s0066.1.p 109 DLLKSIKRRTSS 120
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5424117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3624117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3324117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPSSRSRAR SMPHVPVEGL QEPGPSPFLA KTYEMVDDPN TNNIVSWSRE GISFVVWDPY  60
SFSASILPLY FKHNNFSSFV RQLNTYGFRK IETERWEFMN EGFLMGQRDL LKSIKRRTSS  120
SSPPSLIHSH PESHDPSVEL PQLREERYVL VMELSRLRQE EQRARGYIQA MEQRINGVEK  180
KQRHMMSFLR RAVQNPSLLQ QVLEQMRGLE EAAMIDQASL VKTEAVEHVS ELEALALEMQ  240
GYGRKRIDGV ERELDDGFWE ELLMNNDNWN NEEEANVNQV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-242412213125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0664s0066.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293175.10.0heat stress transcription factor A-7b isoform X1
SwissprotQ9M1V51e-165HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLR0HQ530.0R0HQ53_9BRAS; Uncharacterized protein
STRINGCagra.0664s0066.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-151HSF family protein