PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0635s0017.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 384aa    MW: 42244.4 Da    PI: 5.1453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0635s0017.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.7e-15185239357
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          ++k+ rr+ +NRe+ArrsR+RK++++  Le+ v  L++e ++L k+l++++ +++
  Cagra.0635s0017.2.p 185 DVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYD 239
                          789*****************************************99999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.6E-20183247IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.116185240IPR004827Basic-leucine zipper domain
PfamPF001702.0E-14185239IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12186238No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-12187238No hitNo description
PROSITE patternPS000360190205IPR004827Basic-leucine zipper domain
PfamPF124984.8E-13254317IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MNSIFSIDDF SDPFWETPPI PLNPDSSKNP TAAEVSQSQP EWTFEMFLEE ISISSSAVSS  60
EPLGNNNAIV GVSSAQSLPS VSGQNDFEDD SRFRDRDSGN WDCAAPPPPT TVVVDSDDYR  120
QTQLQPAQSN PLTQGKIGVT SSLPAELKKS GVPMKQVTSG SSRDYSDDDD LDEENETTGS  180
LNPEDVKKSR RMLSNRESAR RSRRRKQEQT SDLETQVNDL KGEHSSLLKQ LSNMNHKYDE  240
AAVGNRILKA DIETLRAKVK MAEETVKRVT GMNPMLLGRS SGHNNNRMPV TGNNRMDSSS  300
NNPAFQPHSN LNHMSNPNVG IPNILPPRLG NNFVPPPSLN SQANLPLQRI RNGQNHHVAP  360
NGNPYGWTTE PQNDSAWPKK CVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199206RRSRRRKQ
2201206SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0635s0017.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808540.0AY080854.1 Arabidopsis thaliana unknown protein (At4g02640) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635853.10.0basic leucine zipper 10 isoform X2
SwissprotO227630.0BZP10_ARATH; Basic leucine zipper 10
TrEMBLR0GRA40.0R0GRA4_9BRAS; Uncharacterized protein
STRINGCagra.0635s0017.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02640.10.0bZIP family protein
Publications ? help Back to Top
  1. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]