![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.0635s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 390aa MW: 42769.1 Da PI: 5.1453 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48 | 2.8e-15 | 191 | 245 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++k+ rr+ +NRe+ArrsR+RK++++ Le+ v L++e ++L k+l++++ +++ Cagra.0635s0017.1.p 191 DVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYD 245 789*****************************************99999888776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.6E-20 | 189 | 253 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.116 | 191 | 246 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.0E-14 | 191 | 245 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-12 | 192 | 244 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.7E-12 | 193 | 244 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 196 | 211 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 5.0E-13 | 260 | 323 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 390 aa Download sequence Send to blast |
MNSIFSIDDF SDPFWETPPI PLNPDSSKNP TAAEVSQSQP EWTFEMFLEE ISISSSAVSS 60 EPLGNNNAIV GVSSAQSLPS VSGQNDFEDD SRFRDRDSGN WDCAAPPPPT TVVVDSDDYR 120 QTQLQPAQSN PLTQGSLVAP GKIGVTSSLP AELKKSGVPM KQVTSGSSRD YSDDDDLDEE 180 NETTGSLNPE DVKKSRRMLS NRESARRSRR RKQEQTSDLE TQVNDLKGEH SSLLKQLSNM 240 NHKYDEAAVG NRILKADIET LRAKVKMAEE TVKRVTGMNP MLLGRSSGHN NNRMPVTGNN 300 RMDSSSNNPA FQPHSNLNHM SNPNVGIPNI LPPRLGNNFV PPPSLNSQAN LPLQRIRNGQ 360 NHHVAPNGNP YGWTTEPQND SAWPKKCVD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 205 | 212 | RRSRRRKQ |
2 | 207 | 212 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.0635s0017.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF310222 | 0.0 | AF310222.1 Arabidopsis thaliana bZIP protein BZO2H1 mRNA, complete cds, alternatively spliced. | |||
GenBank | BT025558 | 0.0 | BT025558.1 Arabidopsis thaliana At4g02640 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286506.1 | 0.0 | basic leucine zipper 10 isoform X1 | ||||
Swissprot | O22763 | 0.0 | BZP10_ARATH; Basic leucine zipper 10 | ||||
TrEMBL | R0GRA4 | 0.0 | R0GRA4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0635s0017.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14871 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02640.2 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.0635s0017.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|