 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.0630s0001.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 283aa MW: 30688.6 Da PI: 8.0986 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0630s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.9 | 1.7e-18 | 126 | 180 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k
Cagra.0630s0001.1.p 126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 124.8 | 3.8e-40 | 126 | 215 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl+keq++lLE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +
Cagra.0630s0001.1.p 126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-A 214
69*************************************************************************************9.4 PP
HD-ZIP_I/II 91 l 91
l
Cagra.0630s0001.1.p 215 L 215
4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009735 | Biological Process | response to cytokinin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MGFDDSCNTG LVLGLGLSPA SNNYNHAIKK ASATVDHRLI RLDPSLTLSL SGESYKTKTL 60
AGAGDQICRQ TSSHSGISSF SSGRVKRERD VCGGGDGEEE AEETTERVVC SRVSDDHEDE 120
EGVSARKKLR LTKEQSALLE DSFKIHSTLN PKQKQALARQ LNLRPRQVEV WFQNRRARTK 180
LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKLSQP FYMHMPAATL TMCPSCETLG 240
GGGGGAGGGT AAVVDGETAK GAFSIVTKPR FFNPFTNPSA AC*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 174 | 182 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | ATU09336 | 0.0 | U09336.1 Arabidopsis thaliana clone HAT22 homeobox protein mRNA, complete cds. |
| GenBank | AY087563 | 0.0 | AY087563.1 Arabidopsis thaliana clone 36691 mRNA, complete sequence. |
| GenBank | BT002318 | 0.0 | BT002318.1 Arabidopsis thaliana clone C105403 putative homeobox protein HAT22 (At4g37790) mRNA, complete cds. |
