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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0622s0012.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 317aa MW: 34773.6 Da PI: 5.9227 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.3 | 3.5e-13 | 166 | 210 | 9 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++++ Re+ArrsR+RK++++ Le v++L++eN++L k+l ++ Cagra.0622s0012.2.p 166 KRIR-RESARRSRRRKQEYLVDLESQVDSLKGENSTLYKQLIDATQ 210 5555.9*******************************988765555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.0E-9 | 159 | 221 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-10 | 170 | 205 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.13E-8 | 170 | 210 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-9 | 170 | 211 | No hit | No description |
PROSITE profile | PS50217 | 8.6 | 170 | 205 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.2E-4 | 228 | 305 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSQLTLPLPS FPTNFSSSSC VFIYQKKMDG HTAKDMGMKR SASELALQEY VTKFLSSSAL 60 SRQESILLDT IPLDPSFDLI NRDYTSELRD SLLWSDCLIP TGNFRDAQSS ICENLSADSP 120 VSANKPEARG GARRTTSGSS HDHSDEEDAE TEAGQSEMTN DPNDLKRIRR ESARRSRRRK 180 QEYLVDLESQ VDSLKGENST LYKQLIDATQ QFRSAGTNNR VLKSDVETLR VKVKLAEDLV 240 ARGSLTSSLN QLLQTHLSPP PHSINSLHYT GNTSPAVRVH SDQSLFPGMT LSGQTSSPGL 300 GNVSSEAVSC VSDIWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 179 | LKRIRRESARRSRRRK |
2 | 173 | 180 | RRSRRRKQ |
3 | 175 | 180 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0622s0012.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF310223 | 0.0 | AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds. | |||
GenBank | AK226873 | 0.0 | AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288231.1 | 0.0 | basic leucine zipper 9 | ||||
Swissprot | Q9FUD3 | 1e-176 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | R0GW39 | 0.0 | R0GW39_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0622s0012.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-140 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0622s0012.2.p |
Publications ? help Back to Top | |||
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