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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0578s0070.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MIKC_MADS |
Protein Properties |
Length: 256aa MW: 28917.6 Da PI: 6.3771 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0578s0070.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
Cagra.0578s0070.1.p 9 KKIENVNSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSS 59
68***********************************************96 PP
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2 | K-box | 53.5 | 1e-18 | 89 | 178 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+++++e ++ + +k e+e Lq + +l+G++L+ +s+ +L Le+qL++sl +++++K+++ll+qie+++ +ek++ een+ Lrk++e
Cagra.0578s0070.1.p 89 SSHENEAVLRNDDSMKGELERLQLAIERLKGKELDGMSFPDLITLENQLNESLHSVKDQKTKFLLNQIERSRLQEKRALEENQILRKQVE 178
55667777788899*************************************************************************986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 3.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.55E-40 | 2 | 69 | No hit | No description |
SuperFamily | SSF55455 | 9.29E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-15 | 91 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.662 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MGRGRIEIKK IENVNSRQVT FSKRRNGLIK KAKELSILCD AEVALIIFSS TGKIYDFSSV 60 CMEQILSRYG YTAASTEHKQ REKQLLLCSS HENEAVLRND DSMKGELERL QLAIERLKGK 120 ELDGMSFPDL ITLENQLNES LHSVKDQKTK FLLNQIERSR LQEKRALEEN QILRKQVELL 180 GRSSVPKVLS ERPQISSPEA DRESSSSDDD ENDNEEHHSD TSLQLGLSST GYCTQRKKPK 240 MELVCDNSGS QVASD*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF312663 | 0.0 | AF312663.1 Arabidopsis thaliana MADS-box protein AGL18 (AGL18) mRNA, complete cds. |
GenBank | AK222220 | 0.0 | AK222220.1 Arabidopsis thaliana mRNA for MADS transcription factor-like protein, complete cds, clone: RAFL25-29-C20. |