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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0578s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 28917.6 Da PI: 6.3771 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss Cagra.0578s0070.1.p 9 KKIENVNSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 53.5 | 1e-18 | 89 | 178 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++++e ++ + +k e+e Lq + +l+G++L+ +s+ +L Le+qL++sl +++++K+++ll+qie+++ +ek++ een+ Lrk++e Cagra.0578s0070.1.p 89 SSHENEAVLRNDDSMKGELERLQLAIERLKGKELDGMSFPDLITLENQLNESLHSVKDQKTKFLLNQIERSRLQEKRALEENQILRKQVE 178 55667777788899*************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.55E-40 | 2 | 69 | No hit | No description |
SuperFamily | SSF55455 | 9.29E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-15 | 91 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.662 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRGRIEIKK IENVNSRQVT FSKRRNGLIK KAKELSILCD AEVALIIFSS TGKIYDFSSV 60 CMEQILSRYG YTAASTEHKQ REKQLLLCSS HENEAVLRND DSMKGELERL QLAIERLKGK 120 ELDGMSFPDL ITLENQLNES LHSVKDQKTK FLLNQIERSR LQEKRALEEN QILRKQVELL 180 GRSSVPKVLS ERPQISSPEA DRESSSSDDD ENDNEEHHSD TSLQLGLSST GYCTQRKKPK 240 MELVCDNSGS QVASD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 3e-20 | 1 | 87 | 1 | 85 | MEF2 CHIMERA |
6bz1_B | 3e-20 | 1 | 87 | 1 | 85 | MEF2 CHIMERA |
6bz1_C | 3e-20 | 1 | 87 | 1 | 85 | MEF2 CHIMERA |
6bz1_D | 3e-20 | 1 | 87 | 1 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0578s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF312663 | 0.0 | AF312663.1 Arabidopsis thaliana MADS-box protein AGL18 (AGL18) mRNA, complete cds. | |||
GenBank | AK222220 | 0.0 | AK222220.1 Arabidopsis thaliana mRNA for MADS transcription factor-like protein, complete cds, clone: RAFL25-29-C20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291720.1 | 0.0 | agamous-like MADS-box protein AGL18 | ||||
Swissprot | Q9M2K8 | 1e-159 | AGL18_ARATH; Agamous-like MADS-box protein AGL18 | ||||
TrEMBL | R0HL44 | 0.0 | R0HL44_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0578s0070.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006291720.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6061 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 1e-156 | AGAMOUS-like 18 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0578s0070.1.p |