PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0578s0014.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 302aa MW: 32722.8 Da PI: 9.816

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0578s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.4	9.7e-16	231	273	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ Cagra.0578s0014.1.p 231 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRR 273 79***************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.4E-14	224	274	No hit	No description
SMART	SM00338	1.3E-12	227	299	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.427	229	274	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.5E-10	231	276	No hit	No description
CDD	cd14707	4.02E-23	231	285	No hit	No description
Pfam	PF00170	1.2E-12	231	274	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	234	249	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDSQRGIVEE AKSQSLNRQG SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ 60 PSSMAMNGAA TAQEGLSRQG SLTLPRDLSK KTVDEVWKDI QQNKNGGTAH ERRDKQPTLG 120 EMTLEDLLLK AGVVTETIPG SNHDAPGGPA GGGGSAGSGA GLGQNISPVG PWVQYHQLPS 180 MPQPQAFMPY PVSDMQTMVS QSSMMGGLSD TQTPGRKRVA SGEVVEKTVE RRQKRMIKNR 240 ESAARSRARK QAYTHELEIK VSRLEEENER LRRQKEVEKI LPSAPPPDPK RQLRRTSSAP 300 F*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0578s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017162	0.0	AB017162.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 3 (AREB3), complete cds.
GenBank	AY062448	0.0	AY062448.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850; T8M16_180) mRNA, complete cds.
GenBank	AY081670	0.0	AY081670.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023638030.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	0.0	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	R0FMQ7	0.0	R0FMQ7_9BRAS; Uncharacterized protein
STRING	Cagra.0578s0014.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	0.0	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Cagra.0578s0014.1.p

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]