PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0578s0007.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 237aa MW: 26337.8 Da PI: 6.5136

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0578s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	52	98	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr+ll + K +Ka+ L k+v+ +k+L Cagra.0578s0007.1.p 52 RNHKEAERRRRERINSHLNTLRSLLSCN-----SKTDKATLLAKVVQRVKEL 98 58*********************997.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-9	52	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-12	53	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-10	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	7.97E-4	138	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MQPEISDHIF YSFLTGGLCA STTSTSTTRT SSFYPFAIED TISQDKALAS LRNHKEAERR 60 RRERINSHLN TLRSLLSCNS KTDKATLLAK VVQRVKELKQ QTLGIADETL PSETDEISVV 120 NSEEYCSDND DGRIIFKVSF CCEDRSDLLQ DLMETLDSLQ METLFADMTT VGGRSRNVLV 180 VAADKERHGV DSVQFLQNAL KSLLERSSKS VMMGHGGGGG GERLKRRRAL DHIIMV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	62	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0578s0007.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL390921	1e-138	AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBank	CP002686	1e-138	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291776.1	1e-143	putative transcription factor bHLH107
Swissprot	Q9LET0	1e-123	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	R0H5W5	1e-142	R0H5W5_9BRAS; Uncharacterized protein
STRING	Cagra.0578s0007.1.p	1e-173	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3642	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	1e-124	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.0578s0007.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]