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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0568s0175.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 21152.7 Da PI: 4.9656 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.1e-16 | 13 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ tae+Aa a++ a+ +l+g Cagra.0568s0175.1.p 13 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTAEMAATAYDVAAMALKG 62 68****9.55.6*********843...5***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.5E-10 | 13 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-18 | 14 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-28 | 14 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-29 | 14 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 14 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.67E-28 | 15 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSSAGLASRK KDPVYRGIRC RSGKWVSEIR EPRKTTRIWL GTYPTAEMAA TAYDVAAMAL 60 KGREAVLNFP ESAMSYPVPV STSAADIRTA AAAAASVKGC TEYGEEVEKE SKKKKKKTSS 120 SSSKSRASEC HVDNDVASSS WCGTEFMDED EVLNMPNLLA NMAEGMMLAP PSWMDSRPSD 180 DSPENSNDED LWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-14 | 1 | 71 | 1 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00138 | DAP | Transfer from AT1G12630 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0568s0175.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633148.1 | 1e-101 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q38Q39 | 3e-84 | ERF27_ARATH; Ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | R0IKU5 | 1e-100 | R0IKU5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0568s0175.1.p | 1e-140 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 3e-64 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0568s0175.1.p |