PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0567s0023.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 385aa    MW: 43271 Da    PI: 10.4723
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0567s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31318376360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  Cagra.0567s0023.1.p 318 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 376
                          99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.8E-18268314IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-33304376IPR003657WRKY domain
PROSITE profilePS5081130.366311377IPR003657WRKY domain
SuperFamilySSF1182901.44E-26314376IPR003657WRKY domain
SMARTSM007742.0E-37316376IPR003657WRKY domain
PfamPF031062.1E-26318375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLNRPQQQQQ QQQDHVGFER NLVSETREAV LRFKRVSTLL  60
STSVGHARFR RAKKLPTHVS QGILLDPCHQ KTDQRTELAP SSSSQKPPVL RSGFQELSLS  120
RPSDSLTLGT KSFSLNPNAK VPLLQLSQPV VPSANYPNLF PDKQKQQQQQ HKQLQQQQQQ  180
QFHERLKAHH LHQQQQLQKH QAELMLRKCN GGISLSFDNS SCTPTISSTR SFVSSLSIDG  240
SVANVEGKNS FHLVGVPSST DQNSLHSKRK CPLKGDEHGG LKCGSTSRCH CSKKRKHRVR  300
RSIRVPAISN KVADIPPDDY SWRKYGQKPI KGSPYPRGYY KCSSMRGCPA RKHVERCLED  360
PAMLIVTYEA EHNHPKLPSQ AITT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20304379276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0567s0023.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294407.10.0probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLR0HPU00.0R0HPU0_9BRAS; Uncharacterized protein
STRINGCagra.0567s0023.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.10.0WRKY DNA-binding protein 21