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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0562s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 402aa MW: 44020.5 Da PI: 6.5197 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.7 | 1.4e-14 | 226 | 280 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr+rr+ +NRe+ArrsR+RK++++ e + v +L ae ++L ++l+ ++ +++ Cagra.0562s0051.1.p 226 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLLNRLSDMNHKYD 280 68******************************************77776666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.5E-16 | 224 | 288 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.9E-10 | 225 | 278 | No hit | No description |
PROSITE profile | PS50217 | 10.668 | 226 | 280 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.4E-12 | 227 | 280 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.22E-10 | 228 | 278 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 231 | 246 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.1E-12 | 295 | 345 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MHIVFSVDDL TESFWPVPAP APSPGSTPVP APPQNMTDGM TRSQSEWAFH RLLNELSGSD 60 SSATTNTIER SPPPVQSLPR VEETVDETED VVEIQKPQQS HHRLPADDQG NRNRAPSSDP 120 LDSSASVDPN QYHAILKSKL ELACAAVARR VGTVKPEDSS ASASNQKQGS AVAQTSPGAS 180 SVKFSSSTST QKKPDVPARQ TTSISSRDDS DDDDLDGDAD NGDPTDVKRA RRMLSNRESA 240 RRSRRRKQEQ MNEFDTQVGQ LRAEHSTLLN RLSDMNHKYD AAAVDNRILR ADIETLRTKV 300 KMAEETVKRV TGVNPLHWAR PNMGIPFNNT PSAPTRIPPN TNHIVKPGIP STTTTSAGLA 360 PNQRAEAANF LPEQVNREGM QNPFAPDSNM YETLPHWNHK H* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 247 | RRSRRRKQ |
2 | 242 | 247 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0562s0051.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057509 | 0.0 | AY057509.1 Arabidopsis thaliana bZIP transcription factor-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291240.1 | 0.0 | basic leucine zipper 25 isoform X1 | ||||
Swissprot | Q9M1G6 | 0.0 | BZP25_ARATH; Basic leucine zipper 25 | ||||
TrEMBL | R0HJT9 | 0.0 | R0HJT9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0562s0051.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5848 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 0.0 | basic leucine zipper 25 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0562s0051.1.p |
Publications ? help Back to Top | |||
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