PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0562s0034.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 182aa    MW: 20098.1 Da    PI: 10.4468
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0562s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702153.91.1e-47341704154
               DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 
                           ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++  r+                +++ s+rk++lk++kqs+++ + +++
  Cagra.0562s0034.1.p  34 AEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSAIRS----------------SSSPSERKKKLKIDKQSSTNVSLVQT 107
                          6789***************************************99988................35567778888889999999999999 PP

               DUF702  94 aeskkeletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                          ++s++e ++++ lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++
  Cagra.0562s0034.1.p 108 TSSRQERSFKEgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 170
                          999998888777*******************9868899***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-4236169IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.8E-273778IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.7E-29120168IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MLGLRNIILL SPPPQIARPS PSPVNLAAVE ENKAEKVCRD CGNRAKKECL FERCRTCCKS  60
RGYNCATHVK STWVPSSAIR SSSSPSERKK KLKIDKQSST NVSLVQTTSS RQERSFKEGL  120
PGKIEAPAVF KRTRVTAISN NEQAEIGYQA TVTISGHVFK GFLHYYGVDH NKAFPCLSQK  180
R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0562s0034.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526750.0AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291913.11e-132protein SHI RELATED SEQUENCE 6
SwissprotQ9M2U41e-110SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLR0FRH61e-131R0FRH6_9BRAS; Uncharacterized protein
STRINGCagra.0562s0034.1.p1e-132(Capsella grandiflora)
STRINGXP_006291913.11e-132(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.11e-102SHI-related sequence 6
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]