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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0562s0034.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 182aa MW: 20098.1 Da PI: 10.4468 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0562s0034.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 153.9 | 1.1e-47 | 34 | 170 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93
++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ r+ +++ s+rk++lk++kqs+++ + +++
Cagra.0562s0034.1.p 34 AEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSAIRS----------------SSSPSERKKKLKIDKQSSTNVSLVQT 107
6789***************************************99988................35567778888889999999999999 PP
DUF702 94 aeskkeletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
++s++e ++++ lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++
Cagra.0562s0034.1.p 108 TSSRQERSFKEgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 170
999998888777*******************9868899***********************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MLGLRNIILL SPPPQIARPS PSPVNLAAVE ENKAEKVCRD CGNRAKKECL FERCRTCCKS 60 RGYNCATHVK STWVPSSAIR SSSSPSERKK KLKIDKQSST NVSLVQTTSS RQERSFKEGL 120 PGKIEAPAVF KRTRVTAISN NEQAEIGYQA TVTISGHVFK GFLHYYGVDH NKAFPCLSQK 180 R*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY052675 | 0.0 | AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. |