PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0562s0031.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 157aa    MW: 18119.8 Da    PI: 7.7074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0562s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.32.3e-131213610128
                  NAM  10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          tde+++  yL++kv+g+ +   ++ ++++  ++y+ ePw Lp+        + +ew++  kr++ky+   +++ +  +g W      +++
  Cagra.0562s0031.1.p  12 TDEDIIEGYLRPKVNGEATANPRFmVDNMgeELYTREPWLLPQptD--PilNPHEWFYLGKRNSKYR---QAEGVDCEGAWILIQGRTPI 96 
                          9****************965555536666558*********96332..233678********99996...34556679****98888999 PP

                  NAM  93 lsk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                          ls+ +ge++g    + +    k+++     ++W+m +y l
  Cagra.0562s0031.1.p  97 LSEeSGEVIGATMRFRYCfrkKNDKAAMAFSNWFMRQYCL 136
                          9875677777777777666544455556689*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.0993155IPR003441NAC domain
PfamPF023656.4E-88135IPR003441NAC domain
SuperFamilySSF1019419.94E-2211153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVGQGEVRCR ITDEDIIEGY LRPKVNGEAT ANPRFMVDNM GEELYTREPW LLPQPTDPIL  60
NPHEWFYLGK RNSKYRQAEG VDCEGAWILI QGRTPILSEE SGEVIGATMR FRYCFRKKND  120
KAAMAFSNWF MRQYCLCDKS KPYNTPHVLC KITCNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0562s0031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290412.11e-113NAC domain-containing protein 96
TrEMBLR0HE411e-111R0HE41_9BRAS; Uncharacterized protein
STRINGCagra.0562s0031.1.p1e-115(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.12e-60NAC domain containing protein 27