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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cagra.0551s0039.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
C3H |
Protein Properties |
Length: 472aa MW: 50409.9 Da PI: 8.6688 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0551s0039.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 50 | 74 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+ C +++rtG C yG rC+++H++
Cagra.0551s0039.1.p 50 APDCAYYMRTGVCGYGHRCRYNHPR 74
589********************96 PP
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2 | zf-CCCH | 40.4 | 4.7e-13 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+f+++tGtCk+G++CkF+H++
Cagra.0551s0039.1.p 95 EPPCQFYLKTGTCKFGASCKFHHPK 119
79*********************96 PP
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3 | zf-CCCH | 36.2 | 1e-11 | 141 | 165 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+ +C+++++tG+Ck+G +CkF+H++
Cagra.0551s0039.1.p 141 ENECSYYLKTGQCKFGITCKFHHPQ 165
678********************97 PP
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4 | zf-CCCH | 37.8 | 3.2e-12 | 292 | 318 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+++++tG Ck+G +CkF+H++
Cagra.0551s0039.1.p 292 PGEPECQYYLKTGDCKFGTSCKFHHPR 318
5799*********************96 PP
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5 | zf-CCCH | 32.4 | 1.6e-10 | 339 | 364 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+ +C f+ ++G+Ck+G++CkF H++
Cagra.0551s0039.1.p 339 GVQRCTFYVQNGFCKFGSTCKFDHPM 364
6779********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.188 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-7 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-7 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.901 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.995 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-9 | 141 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 144 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 293 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 297 | 319 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 337 | 364 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 337 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 339 | 368 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-8 | 339 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-5 | 343 | 364 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MDLYARNPPI NGSQSAQAPD WIPADSDTGL EESMWRLGLG SETYPERPGA PDCAYYMRTG 60 VCGYGHRCRY NHPRDRASVE ATVRATGQYP ERIGEPPCQF YLKTGTCKFG ASCKFHHPKN 120 AGGSMSHVPL NIYGYPVREG ENECSYYLKT GQCKFGITCK FHHPQPAGTT VPPPPASAPQ 180 FYPSVQSLMP DQYGGPSSSL RVARTLLPGS YMQGAYGPML LTPGVVPIPG WSPYSAPVSP 240 ALSPGAQHAV GATSLYGVTQ LSSTTPSLPG VYPSLSSPTG VIQKDQAFPE RPGEPECQYY 300 LKTGDCKFGT SCKFHHPRDR IPPRANCILS PIGLPLRPGV QRCTFYVQNG FCKFGSTCKF 360 DHPMGNIRYN PSASSLADAP VAPYPVSSLL GGGLAAAPSS SSTELITGGA KDPYLTGLPS 420 SRSTSSISAG LIFSQSGGSI PFSELQLSSQ TSLPLTGSRI TRQGREIRRS F*
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