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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0542s0040.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MIKC_MADS |
Protein Properties |
Length: 195aa MW: 22540 Da PI: 8.8779 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0542s0040.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.6 | 1.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskR++g+lKKA+ELSvLCda+va i+fs++gkly+++s
Cagra.0542s0040.1.p 9 KRIENLTSRQVTFSKRKKGLLKKAHELSVLCDAQVAAIVFSQKGKLYDFAS 59
79***********************************************86 PP
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2 | K-box | 51.8 | 3.6e-18 | 83 | 166 | 9 | 92 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92
+ e+ + l++e++ + ++i+ Lq R+l+G+dL+s s+ eL+++ qLeksl+ +Rs+K +l +++e+l + ++l++e+
Cagra.0542s0040.1.p 83 QREKYVQDLKKEISVMVNRIDLLQLHCRKLMGQDLDSSSVDELKEITIQLEKSLTIVRSRKAKLNEDEVEKLEEESRSLDNEKS 166
56788999****************999***************************************************999875 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MARKKIEIKR IENLTSRQVT FSKRKKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYDFASS 60 NMEKMMERCE IYRREYFSAE RFQREKYVQD LKKEISVMVN RIDLLQLHCR KLMGQDLDSS 120 SVDELKEITI QLEKSLTIVR SRKAKLNEDE VEKLEEESRS LDNEKSAASC GYGNMNTSDV 180 ETDLFIGLPQ SRML*
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |