PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0542s0037.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 334aa    MW: 38262.4 Da    PI: 8.6609
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0542s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.91.6e-56161421129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk
  Cagra.0542s0037.1.p  16 LPPGFRFHPTDEELITHYLHKKVLDITFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDK 104
                          79**************************99.88***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrle
  Cagra.0542s0037.1.p 105 EIYR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-6412166IPR003441NAC domain
PROSITE profilePS5100559.96316166IPR003441NAC domain
PfamPF023658.7E-3017141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD ITFSAKAIGE VDLNKSEPWE  60
LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYRGRAPKGQ KTNWVMHEYR LEGKFSPHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR  180
IGSLGTDFNP SLLPSLTDSL PYNDKTKTEP VYVPCFSNQT DHNQGTTLNC FSSPALNSIQ  240
ADIFHRLPLY QTQPLQVPTN LQSPILAQEH TVLHAMIENN RRRQSHKTMS VSQETGVSTD  300
ISSDFEFGKR RFEPQEDPSS STGPVDLEPF WNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-551317214171NO APICAL MERISTEM PROTEIN
1ut4_B3e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_A3e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_B3e-551317214171NO APICAL MERISTEM PROTEIN
3swm_A3e-551317217174NAC domain-containing protein 19
3swm_B3e-551317217174NAC domain-containing protein 19
3swm_C3e-551317217174NAC domain-containing protein 19
3swm_D3e-551317217174NAC domain-containing protein 19
3swp_A3e-551317217174NAC domain-containing protein 19
3swp_B3e-551317217174NAC domain-containing protein 19
3swp_C3e-551317217174NAC domain-containing protein 19
3swp_D3e-551317217174NAC domain-containing protein 19
4dul_A3e-551317214171NAC domain-containing protein 19
4dul_B3e-551317214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0542s0037.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0546440.0AY054644.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBankAY0814960.0AY081496.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBankAY0851020.0AY085102.1 Arabidopsis thaliana clone 12970 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280783.10.0NAC domain-containing protein 100
SwissprotQ9FLJ20.0NC100_ARATH; NAC domain-containing protein 100
TrEMBLR0EXP70.0R0EXP7_9BRAS; Uncharacterized protein
STRINGCagra.0542s0037.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.10.0NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]